Mercurial > repos > chmaramis > testirprofiler

diff cmpb2016/comp_clono_VCDR3.xml @ 0:8be019b173e6 draft

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author chmaramis
date Sun, 18 Mar 2018 05:54:20 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cmpb2016/comp_clono_VCDR3.xml	Sun Mar 18 05:54:20 2018 -0400
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+<tool id="compClonoVCDR3" name="V+CDR3 Clonotypes Computation" version="0.9">
+  <description>Compute V+CDR3 clonotypes</description>
+  <command interpreter="python">comp_clono_VCDR3.py $input $clonos $topcl $summ2 ${input.name}</command>
+  <inputs>
+    <param format="tabular" name="input" type="data" label="Filtered-in File"/>
+
+	
+  </inputs>
+  
+<outputs>
+	<data name="clonos" format="tabular" 	label="${input.name}_clonotypes"/>
+	<data name="topcl" format="tabular" 	label="${input.name}_top10clonos"/>
+	<data name="summ2" format="tabular" 	label="${input.name}_Summary2"/>
+
+
+
+  </outputs>
+
+
+  <help>
+This tool computes the (V-gene, CDR3) clonotypes and their frequencies.
+  </help>
+
+</tool>