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view cmpb2016/comp_clono_VJCDR3.xml @ 1:1319c163872c draft

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Uploaded README file
author chmaramis
date Sun, 18 Mar 2018 06:26:39 -0400
parents 8be019b173e6
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<tool id="compClonoVJCDR3" name="V+J+CDR3 Clonotypes Computation" version="0.9">
  <description>Compute V+J+CDR3 clonotypes</description>
  <command interpreter="python">comp_clono_VJCDR3.py $input $clonos $topcl $summ2 ${input.name}</command>
  <inputs>
    <param format="tabular" name="input" type="data" label="Filtered-in File"/>

	
  </inputs>
  
<outputs>
	<data name="clonos" format="tabular" 	label="${input.name}_clonotypesVJCDR3"/>
	<data name="topcl" format="tabular" 	label="${input.name}_top10clonosVJCDR3"/>
	<data name="summ2" format="tabular" 	label="${input.name}_SummaryVJCDR3"/>



  </outputs>


  <help>
This tool computes the (V-gene, J-gene, CDR3) clonotypes and their frequencies.
  </help>

</tool>