Mercurial > repos > chrisb > gap_all_glycan_tools

comparison get_data/kegg_glycan/linkKEGG.xml @ 1:0a5e0df17054 draft default tip

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author chrisb
date Fri, 06 May 2016 08:05:48 -0400
parents 89592faa2875
children
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0:89592faa2875 1:0a5e0df17054
1 <tool id="glytools_kegg_link" name="GAP Cross-reference with KEGG databases " version="0.3.1"> 1 <tool id="glytools_kegg_link" name="GAP Cross-reference with KEGG databases " version="0.3.2">
2 <description> searches KEGG for related database entries</description> 2 <description> searches KEGG for related database entries</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0">python_for_glycan_tools</requirement> 4 <requirement type="package" version="1.0">python_for_glycan_tools</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python"><![CDATA[linkKEGG.py -t $targetdb -s $source -o $output ]]></command> 6 <command interpreter="python"><![CDATA[linkKEGG.py -t $targetdb -s $source -o $output ]]></command>
32 <citation type="doi">10.1002/0471250953.bi0112s38</citation> 32 <citation type="doi">10.1002/0471250953.bi0112s38</citation>
33 </citations> 33 </citations>
34 <tests> 34 <tests>
35 <test> 35 <test>
36 <param name="targetdb" value="glycan" /> 36 <param name="targetdb" value="glycan" />
37 <param name="source" value="ec:2.4.1.11"" /> 37 <param name="source" value="ec:2.4.1.11" />
38 <output name="output" file="link_test1.txt" /> 38 <output name="output" file="link_test1.txt" />
39 </test> 39 </test>
40 </tests> 40 </tests>
41 <help> <![CDATA[ 41 <help> <![CDATA[
42 .. class:: infomark 42 .. class:: infomark