diff get_data/kegg_glycan/test_linkKEGG.py @ 1:0a5e0df17054 draft default tip

Uploaded

--- a/get_data/kegg_glycan/test_linkKEGG.py	Wed Mar 23 14:35:56 2016 -0400
+++ b/get_data/kegg_glycan/test_linkKEGG.py	Fri May 06 08:05:48 2016 -0400
@@ -40,3 +40,76 @@
         m = lk.linked_entries_from_kegg("br", "gl:G10496")
         self.assertEquals(m,"")
 
+    def test_enzyme_glycan_search_1(self):
+         """
+         test  "2.4.99.1 ec: " returns
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1 ec:")
+         self.assertIn("2.4.99.1", m)
+ 
+ 
+    def test_enzyme_glycan_search_2(self):
+         """
+         test  "2.4.99.1 ec: 2.4.99.6" returns
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1 ec: 2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_3(self):
+         """
+         test  "2.4.99.1 ec:2.4.99.6" returns
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1 ec:2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_4(self):
+         """
+         test  "2.4.99.1+2.4.99.6" returns. This time '+' is or.
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1+2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_4b(self):
+         """
+         test  "2.4.99.1+ 2.4.99.6" returns. This time '+' is or.
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1+ 2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_5(self):
+         """
+         test  "2.4.99.1 2.4.99.6" returns. Space also means or for the link db. 
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1 2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+ 
+    def test_enzyme_glycan_search_6(self):
+         """
+         test  "2.4.99.1+nana+2.4.99.6" returns. strangely when inserting junk it still works.
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1+nana+2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_6b(self):
+         """
+         test  "2.4.99.1 nana 2.4.99.6" returns. strangely when inserting junk it still works.
+         """
+         m = lk.linked_entries_from_kegg("glycan", "2.4.99.1+nana+2.4.99.6" )
+         self.assertIn("2.4.99.1", m)
+         self.assertIn("2.4.99.6", m)
+ 
+    def test_enzyme_glycan_search_7(self):
+         """
+         test  "\"2.4.99.1\""  is a bad request as it includes quotes. 
+         """
+         from urllib2 import HTTPError
+         with self.assertRaises(HTTPError):
+             m = lk.linked_entries_from_kegg("glycan", "\"2.4.99.1\"" )
+