Mercurial > repos > chrisb > gap_all_glycan_tools
diff get_data/cfg_array/info/Primary Screen.html @ 0:89592faa2875 draft
Uploaded
| author | chrisb |
|---|---|
| date | Wed, 23 Mar 2016 14:35:56 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_data/cfg_array/info/Primary Screen.html Wed Mar 23 14:35:56 2016 -0400 @@ -0,0 +1,570 @@ +<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> +<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"><!-- +## Site Configuration +## @siteName FG +## @scope Site +## @adaption taken from ABA by JDG@NPG 2006 +--><!-- used in ${common}/includes/separator.fhtml --><!-- used in ${common}/includes/clearfloats.fhtml --><!-- used in ${common}/includes/global.backtotop.fhtml --><!-- SET THE BASE FOLDERS FOR THE SITE --><head> + +<title>Primary Screen</title> + + + + + + <!-- metadata and links --> +<meta http-equiv="Content-Style-Type" content="text/css"> +<meta http-equiv="Content-Type" content="text/html; charset=windows-1252"> + +<link rel="home" href="http://www.functionalglycomics.org/fg/index.shtml" title="home"> + +<!-- provide correct meta robots information - all pages except TOC pages (AOP, Issue, Focus (web and other), Supplements) use default "noarchive" type --> + +<meta name="robots" content="noarchive"> + + +<!-- end metadata and links --> + +<meta name="keywords" content=""> +<meta name="description" content=""> + +<style type="text/css" media="screen, projection"><!--/*--><![CDATA[/*><!--*/ + @import "/fg/style/layout.css"; + @import "/fg/style/site.css"; + @import "/fg/style/header_footer_smallfonts.css"; + @import "/fg/style/restrict_width/930px.css";/* do not edit this stylesheet */ +/*]]>*/--></style> + +<!-- IE specific scripts - min/max fix --> +<!--[if lte IE 6]> + <script type="text/javascript" src="/fg/scripts/minmax.js"></script> +<![endif]--> +<!-- end IE specific scripts --> + +<style type="text/css" media="screen, projection"><!--/*--><![CDATA[/*><!--*/ +@import "/glycomics/common/css/general.css"; +@import "/glycomics/common/css/jquery-ui-1.8.16.custom.css"; +@import "/glycomics/common/css/jquery.bubblepopup.v2.3.1.css"; +label.error { float: none; color: red; padding-left: .5em; vertical-align: middle; }; +/*]]>*/--></style> + +<script src="Primary%20Screen_files/ga.js" async="" type="text/javascript"></script><script type="text/javascript" language="javascript" src="Primary%20Screen_files/css_sidemenu.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/openWindow.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/AnchorPosition.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/CalendarPopup.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/date.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/PopupWindow.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/popupWin.js"></script> +<script type="text/javascript" language="javascript" src="Primary%20Screen_files/details3.js"></script> +<script type="text/javascript" src="Primary%20Screen_files/jquery-1.js" language="javascript"></script> +<script type="text/javascript" src="Primary%20Screen_files/jquery.js" language="javascript"></script> + + +</head> + +<body class="www-nature-com-fg" id="info"> + +<!-- header --> +<div id="head-er"> + <div class="header-nonad-wrapper" id="top"> + <div class="accessibility-login-wrap"> + <div class="accessibility-login"> + <ul class="jumplinks"> + <li class="first"><a href="#content">Jump to main content</a></li> + <li><a href="#main-journal-nav">Jump to navigation</a></li> + </ul> + +<span class="cleardiv"><!-- --></span> + + </div> + </div> + + +<span class="cleardiv"><!-- --></span> + + +<hr> + + + <div class="image-user-services-wrap"> + <div class="image-user-services"> + <a href="http://www.functionalglycomics.org/fg"><img src="Primary%20Screen_files/journal_header.gif" class="journal-header" alt="Functional Glycomics homepage"></a> + +<span class="cleardiv"><!-- --></span> + + </div> + +<span class="cleardiv"><!-- --></span> + + </div> + + +<span class="cleardiv"><!-- --></span> + + +<hr> + + + <div class="publications-search-wrap clearfix"> + + <div class="publications-search"> + </div> + </div> + </div> +</div> +<!-- end header --> + +<!-- opening divs for fixed width layout --> +<div id="constrain"><div class="constrain"> + + +<!-- OPEN DIV FOR CONTENT AND SITE NAVIGATION --> +<div id="content-journalnav"> + + <!-- START JOURNALNAV DIV --> + + <div id="journalnav"><!-- journalnav class must match class on naivgation list item to highlight that item --> + <h1 class="hidden">Site Navigation</h1> + <map title="main journal navigation" id="main-journal-nav" class="journal-nav"> + <ul class="xoxo"> + <li><h1 class="hidden">Site Navigation</h1> + <!-- menuCurrentPage is set to: glycanArray --> + <ul> + <li><a href="http://www.functionalglycomics.org/static/index.shtml" title="Homepage">Home/Search</a></li> + </ul> + </li> + + <li> + <a href="http://www.functionalglycomics.org/static/consortium/consortium.shtml" title="Consortium">Consortium for Functional Glycomics (<abbr title="Consortium for Functional Glycomics">CFG</abbr>)</a> + + </li> +<li class="nav-net"><a href="http://www.functionalglycomics.org/CFGparadigms/index.php/Welcome_to_the_CFG_Paradigm_Pages" class="reg-rec" title="CFG Paradigms">CFG Paradigm Pages</a></li> + + <li> + <a href="http://www.functionalglycomics.org/static/consortium/resources.shtml" title="Resources"><abbr title="CFG resources">CFG</abbr> Resources</a> + + </li> + + + <li class="selected"> + <a href="http://www.functionalglycomics.org/glycomics/publicdata/home.jsp" title="Consortium Data"><abbr title="CFG data">CFG</abbr> Data</a> + + + <ul class="subnav"> + <li class="selected"><a href="http://www.functionalglycomics.org/glycomics/publicdata/primaryscreen.jsp" title="Glycan Screen">Glycan Array</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/glycoprofiling-new.jsp" title="Glycan Profiling">Glycan Profiling</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/microarray.jsp" title="Micro Array">Gene Microarray</a></li><li><a href="http://www.functionalglycomics.org/glycomics/publicdata/phenotyping.jsp" title="Phenotyping">Mouse Phenotyping</a></li></ul> + + </li> + + <li><a href="http://www.functionalglycomics.org/glycomics/common/jsp/firstpage.jsp" title="CFG Molecule Pages"><abbr title="CFG Molecule Pages">CFG</abbr> Molecule Pages</a> + + </li> + + <li><a href="http://www.functionalglycomics.org/static/consortium/Meetings.shtml" title="Meetings">Meetings</a> + + + </li> + + <li> <a href="http://www.functionalglycomics.org/static/consortium/Library.shtml" title="Library">CFG Library</a> + + + </li> + <li class="spacing"><h2 class="toolbox">Toolbox</h2></li><li> +<a href="http://www.openhelix.com/cfg" title="OpenHelix Tutorial" target="tutorial">Tutorial</a> +</li><li><a href="http://www.functionalglycomics.org/static/consortium/links.shtml" title="Glycomics Links">Glycomics Links</a> + + </li><li><a href="http://www.functionalglycomics.org/fg/site_guide/about.shtml" title="About us">About us</a></li><li><a href="http://www.functionalglycomics.org/glycomics/common/jsp/suggestion/suggestion.jsp" title="suggestion">Suggestion</a></li><li><a href="http://www.functionalglycomics.org/static/consortium/map.shtml" title="Sitemap">Sitemap</a></li><li><a href="http://www.functionalglycomics.org/static/consortium/FAQs.shtml" title="FAQs">FAQs</a></li></ul></map> + + + +<!-- +<ul class="xoxo toolbox"> + <li><h2>Toolbox</h2> + <ul> + <li class="nav-rss"><a class="rss" href="/fg/#"><abbr title="Rich Site Summary">RSS</abbr></a></li + ><li class="nav-e-alert"><a href="/fg/ealert/signup.shtml">E-alerts</a></li + ></ul> + </li> +</ul> +--> +<!-- <p class="nav-new"><a class="whats-new" href="http://www.functionalglycomics.org/static/consortium/whatsnew.shtml" title="what is new on the Functional Glycomics Consortium page">What's new</a></p> --> + + + + </div><!-- CLOSEs JOURNALNAV DIV --> + +<!-- content --> +<div id="content"> + + + + + + + + + + + +<script type="text/javascript"> + +function checkAll(v,top,mn,mx,a,b) +{ + for(var i=mn;i<mx;i++) + document.pspresentation.selectedSetsToDisplay[i].checked=eval(v); + document.pspresentation.animalLectins.checked=false; + + return unCheckWrongOnes(top,a,b); + +} + +function unCheckWrongOnes(v,a,b) +{ + var i,j; + + if (v < a) { + for(i=a;i<b;i++) + document.pspresentation.selectedSetsToDisplay[i].checked=false; + } + else if (v >= a){ + for(j=0;j<a;j++) + document.pspresentation.selectedSetsToDisplay[j].checked=false; + } + return true; +} + +</script> + + + +<table border="0" width="100%"> + <tbody><tr> + + <td class="norm" valign="top" width="80%"> + + + <table> + <tbody><tr> + <td colspan="2" valign="top" width="100%"> + <h2 align="center">Search glycan array data</h2> + </td> + </tr> + <tr> + <td colspan="2" class="webSiteBodyThin">This search interface offers access to all results obtained from screening + samples for glycan binding specificity on the CFG mammalian glycan array, + CFG pathogen glycan array, and CDC glycan array by the + CFG Protein-Carbohydrate Interaction Core. Please select a + sample type or glycan array version and click on Submit + Selections. From the resulting list of samples, access raw + data, bar charts showing which glycans bound to each sample + with high affinity, and other information. The bar charts are + a portal to further information about relevant glycans, + including a 3-D modeling feature (GLYCAM). + </td> + </tr> + <tr> + <td> </td> + </tr> + <tr> + <td> </td> + </tr> + <tr> + <td class="webSiteBodyThin" colspan="4"> + <ul> + <li> + <a href="javascript:openWindow('http://www.openhelix.com/cfg')">OpenHelix tutorial</a> for CFG Functional Glycomics Gateway + </li> + </ul> + </td> + </tr> + </tbody></table> + + <form name="pspresentation" action="/glycomics/publicdata/selectedScreens.jsp" method="POST"> + <table align="center"> + + <tbody><tr> + <td><!-- left one --> + <table align="center" border="0"> + + <tbody><tr> + <td class="webSiteBodyGreenText" colspan="2">Search by Sample Type</td> + </tr> + <tr> + <td colspan="2"> </td> + </tr> + <tr> + <td colspan="2" class="webSiteBody"><input name="animalLectins" value="true" onclick="checkAll(this.value,1,0,4,8,15)" type="checkbox">Animal Glycan-binding proteins<br> + </td> + </tr> + <tr> + <td> </td> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="cTypeLectins" onclick="unCheckWrongOnes(0,8,15)" type="checkbox">C-type lectins</td> + </tr> + <tr> + <td> </td> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="iTypeLectins" onclick="unCheckWrongOnes(1,8,15)" type="checkbox">Siglecs</td> + </tr> + <tr> + <td> </td> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="sTypeLectins" onclick="unCheckWrongOnes(2,8,15)" type="checkbox">Galectins</td> + </tr> + <tr> + <td> </td> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="otherAnimalLectins" onclick="unCheckWrongOnes(3,8,15)" type="checkbox">Other</td> + </tr> + <tr> + <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="plantLectins" onclick="unCheckWrongOnes(4,8,15)" type="checkbox">Plant Lectins</td> + </tr> + <tr> + <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="antiBodies" onclick="unCheckWrongOnes(5,8,15)" type="checkbox">Antibodies and Serum samples</td> + </tr> + <tr> + <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="other" onclick="unCheckWrongOnes(6,8,15)" type="checkbox">Other (Pathogens [bacteria, viruses], Microbial + lectins, etc)</td> + </tr> + <tr> + <td colspan="2" class="webSiteBody"><input name="selectedSetsToDisplay" value="cellsOrganisms" onclick="unCheckWrongOnes(7,8,15)" type="checkbox">Cells, Organisms</td> + </tr> + + </tbody></table> + + </td> + <td> </td> + <td> </td> + <td> </td> + + + + <td><!-- right one --> + <table align="center"> + + <tbody><tr> + <td class="webSiteBodyGreenText" colspan="2">Or by Glycan + Array type/version </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v1" onclick="unCheckWrongOnes(8,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v1x.xls')">Mammalian Plate Array Ver. 1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v2" onclick="unCheckWrongOnes(9,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v2x.xls')">Mammalian Plate Array Ver. 2</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="v3" onclick="unCheckWrongOnes(10,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/GlycanArray_(EA)_v3x.xls')">Mammalian Plate Array Ver. 3</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv1" onclick="unCheckWrongOnes(11,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/Printed_Array_v1.xls')">Mammalian Printed Array Ver. 1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv2" onclick="unCheckWrongOnes(12,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/coreH/arrayContents/Printed_Array_v2.xls')">Mammalian Printed Array Ver. 2</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv21" onclick="unCheckWrongOnes(13,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/glycomics/publicdata/arrayContents/Printed_Array_v2.1.xls')">Mammalian Printed Array Ver. 2.1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv3" onclick="unCheckWrongOnes(14,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh10.shtml')">Mammalian Printed Array Ver. 3.0</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv31" onclick="unCheckWrongOnes(15,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh11.shtml')">Mammalian Printed Array Ver. 3.1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv32" onclick="unCheckWrongOnes(16,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh12.shtml')">Mammalian Printed Array Ver. 3.2</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv4" onclick="unCheckWrongOnes(17,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh13.shtml')">Mammalian Printed Array Ver 4.0</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv41" onclick="unCheckWrongOnes(18,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh14.shtml')">Mammalian Printed Array Ver 4.1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv42" onclick="unCheckWrongOnes(19,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh15.shtml')">Mammalian Printed Array Ver 4.2</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv5" onclick="unCheckWrongOnes(20,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh16.shtml')">Mammalian Printed Array Ver 5.0</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv51" onclick="unCheckWrongOnes(21,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh8.shtml')">Mammalian Printed Array Ver 5.1</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="pv52" onclick="unCheckWrongOnes(22,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh9.shtml')">Mammalian Printed Array Ver 5.2</a></td> + </tr> + + <tr> + <td class="webSiteBody"><input name="selectedSetsToDisplay" value="bactv1" onclick="unCheckWrongOnes(23,8,24)" type="checkbox"><a href="javascript:openWindow('http://www.functionalglycomics.org:80/static/consortium/resources/resourcecoreh8p.shtml')">Pathogen Array Ver 1.0</a></td> + </tr> + + <tr><td class="webSiteBody"> </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + <tr> + <td class="webSiteBody"> </td> + </tr> + + + </tbody></table> + + <table align="center"> + <tbody><tr> + <td class="webSiteBodyGreenText" colspan="2"> + <a href="http://www.functionalglycomics.org/glycomics/common/jsp/resource/existingFilesForRequest.jsp?requserlogin=rubendonis&resReqKey=1001109&rrid=cfg_rRequest_1336&projectDesc=To%20provide%20an%20interface%20%20to%20upload%20data%20collected%20on%20influenza%20virus%20receptor%20specficity%20with%20the%20custon%20CDC%20array&showDelete=true&showMakePublic=true"> + Data from glycan arrays supplied to Centers for Disease Control</a> + </td> + </tr> + <tr> + <td class="webSiteBodyGreenText" colspan="2"> + + </td> + </tr> + </tbody></table> + + </td> + </tr> + + <tr><td colspan="5" align="center"> + <input name="dataNature" value="DataOnly" type="radio"> Data only + + <input name="dataNature" value="InconclusiveOnly" type="radio"> Inconclusive Only + + <input name="dataNature" value="All" type="radio">All + </td></tr> + + <tr> + <td class="webSiteBodyGreenText" colspan="5" align="center">* + Submitting with no selections would display all the available + results. You may also restrict the results displayed to <b>Data</b> + only or <b>inconclusive</b> results only.</td> + </tr> + <tr> + <td class="webSiteBody" colspan="5" align="center"><input value="Submit Selections" name="B3" type="submit"></td> + </tr> + + + </tbody></table> + </form> + <!--end inner table--></td> + </tr> +</tbody></table> + +</div> +</div><!-- CLOSEs CONTENT-JOURNALNAV DIV --> + +</div></div> + + + +<p class="back-to-top hidden"><a href="#top">Top<span class="hidden"> of page</span></a></p> + + + +<div id="foot-er" class="footer"> + + <div id="footer-journal"> + + <div class="footer-constrain clearfix"> + + <p class="journal-name">Functional Glycomics Gateway</p> + + <p class="eissn"><abbr title="International Standard Serial Number">ISSN</abbr><span class="hidden">:</span> 1752-184X</p> + + +<span class="cleardiv"><!-- --></span> + + + </div> + + +<span class="cleardiv"><!-- --></span> + + + </div> + + + + <div id="footer-copyright"> + + <div class="footer-constrain"> + + <p>© 2010 Functional Glycomics Gateway - All Rights Reserved | <a href="http://www.functionalglycomics.org/fg/privacy_terms.shtml">Privacy policy & Terms of Use</a></p> + + </div> + + </div> + +</div> +<!-- webtrends Version: 8.5.0 --> +<script src="Primary%20Screen_files/webtrends.js" type="text/javascript"></script> +<script type="text/javascript"> +<!--//--><![CDATA[//><!-- + var _tag=new WebTrends(); + _tag.dcsGetId(); +//--><!]]> +</script> +<script type="text/javascript"> <!--//--><![CDATA[//><!-- + // Add custom parameters here. + // _tag.DCSext.param_name=param_value; + _tag.dcsCollect(); +//--><!]]> +</script> +<noscript> +<div><img alt="" id="DCSIMG" width="1" height="1" src="http://statse.webtrendslive.com/dcsc2bh0q10000cprjxnf6sz5_6h4b/njs.gif?dcsuri=/nojavascript&WT.js=No&WT.tv=8.5.0" /> +</div> +</noscript> + +<!-- Google Analytics --> +<script type="text/javascript"> + + var _gaq = _gaq || []; + _gaq.push(['_setAccount', 'UA-23107886-2']); + _gaq.push(['_trackPageview']); + + (function() { + var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true; + ga.src = ('https:' == document.location.protocol ? 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