Mercurial > repos > chrisd > resistome_analyzer
comparison resistome_analyzer.xml @ 1:c9fbf44a96f7 draft default tip
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 8ae28ea5f8b137ff7403efbb968152aa6aae22bf
| author | chrisd |
|---|---|
| date | Tue, 11 Oct 2016 03:47:35 -0400 |
| parents | 6e3417efcef3 |
| children |
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| 0:6e3417efcef3 | 1:c9fbf44a96f7 |
|---|---|
| 13 -sam_fp $sam | 13 -sam_fp $sam |
| 14 -gene_fp $gene | 14 -gene_fp $gene |
| 15 -mech_fp $mech | 15 -mech_fp $mech |
| 16 -class_fp $class | 16 -class_fp $class |
| 17 -group_fp $group | 17 -group_fp $group |
| 18 -t $threshold | |
| 18 ]]></command> | 19 ]]></command> |
| 19 <inputs> | 20 <inputs> |
| 20 <param type="data" name="reference" format="fasta" label="Reference sequence" /> | 21 <param type="data" name="reference" format="fasta" label="Reference sequence" /> |
| 21 <param type="data" name="sam" format="sam" label="SAM file" /> | 22 <param type="data" name="sam" format="sam" label="SAM file" /> |
| 22 <param type="data" name="annotation" format="csv" label="Annotation file" /> | 23 <param type="data" name="annotation" format="csv" label="Annotation file" /> |
| 24 <param name="threshold" type="integer" label="Gene fraction threshold" | |
| 25 value="0" min="0" max="100" /> | |
| 23 </inputs> | 26 </inputs> |
| 24 <outputs> | 27 <outputs> |
| 25 <data name="gene" format="tabular" /> | 28 <data name="gene" format="tabular" /> |
| 26 <data name="mech" format="tabular" /> | 29 <data name="mech" format="tabular" /> |
| 27 <data name="class" format="tabular" /> | 30 <data name="class" format="tabular" /> |