# HG changeset patch
# User chrisd
# Date 1476172055 14400
# Node ID c9fbf44a96f79c38da28facc0922afa7fc8fcfcc
# Parent  6e3417efcef347af0139505885cfd2012ca20dbd
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 8ae28ea5f8b137ff7403efbb968152aa6aae22bf

diff -r 6e3417efcef3 -r c9fbf44a96f7 resistome_analyzer.xml
--- a/resistome_analyzer.xml	Sun Oct 09 07:06:21 2016 -0400
+++ b/resistome_analyzer.xml	Tue Oct 11 03:47:35 2016 -0400
@@ -15,11 +15,14 @@
 	  -mech_fp $mech
 	  -class_fp $class
 	  -group_fp $group
+	  -t $threshold
     ]]></command>
     <inputs>
 	<param type="data" name="reference" format="fasta" label="Reference sequence" />
 	<param type="data" name="sam" format="sam" label="SAM file" />
 	<param type="data" name="annotation" format="csv" label="Annotation file" />
+	<param name="threshold" type="integer" label="Gene fraction threshold"
+               value="0" min="0" max="100" />
     </inputs>
     <outputs>
 	<data name="gene" format="tabular" />