Mercurial > repos > chrisd > snipfinder

annotate tool_dependencies.xml @ 0:d9be5a7e70f5 draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
author chrisd
date Wed, 23 Mar 2016 18:04:21 -0400
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children c5085b1ad596
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d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
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1 <?xml version="1.0"?>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
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2 <tool_dependency>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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3 <package name="snp_caller" version="0.1">
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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4 <install version="1.0">
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
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5 <actions>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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6 <action type="shell_command">git clone --recursive https://github.com/ChrisD11/snp_caller.git</action>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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7 <action type="shell_command">make</action>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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8 <action type="move_file">
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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9 <source>snp</source>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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10 <destination>$INSTALL_DIR/bin</destination>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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11 </action>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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12 <action type="set_environment">
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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14 </action>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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15 </actions>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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16 </install>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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17 <readme>Compiling snp finder requires a C++ compiler</readme>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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18 </package>
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
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19 </tool_dependency>