comparison tool_dependencies.xml @ 1:b765dd7a4187 draft default tip

Switched to installing all dependencies using "setup_virtualenv".

0:a86055b09b0a

<?xml version="1.0"?>
<tool_dependency>
    <package name="biopython" version="1.62">
        <repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="ngs-tools" version="0.1.6">
        <install version="1.0">
            <actions>
                <action type="setup_virtualenv">ngs-tools==0.1.6</action>
            </actions>
        </install>
    </package>
</tool_dependency>

1:b765dd7a4187

<?xml version="1.0"?>
<tool_dependency>
    <package name="ngs-tools" version="0.1.6">
        <readme>
This Galaxy Tool Shed package installs ngs-tools. This requires and assumes a
standard C compiler is already installed, along with the Python header files.

Development of this dependency definition is being done here on GitHub:
https://github.com/cjav/ngs-tools/tree/master/galaxy-tools
        </readme>
        <install version="1.0">
            <action type="set_environment_for_install">
                <repository name="package_biopython_1_62" owner="biopython">
                    <package name="biopython" version="1.62" />
                </repository>
            </action>
            <actions>
                <action type="setup_virtualenv">
docopt==0.6.1
biopython==1.62
python-levenshtein==0.10.2
ngs-tools==0.1.6
                </action>
            </actions>
        </install>

    </package>
</tool_dependency>