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First attempt to get tool_dependencies.xml right.
author cjav
date Wed, 20 Mar 2013 17:07:14 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="smalt" version="0.7.3">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-0.7.3.tgz</action>
                <action type="move_file">
                    <source>smalt_x86_64</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>smalt_i686</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Upstream authors only provide binaries so far. This tool dependency definition will install both Linux binaries(i686/x86_64) and the wrapper will try to use the right one by using 'smalt_`uname -i`'.
        </readme>
    </package>
</tool_dependency>