view detrprok_scripts/colorGff.xml @ 0:a53eb951b164 draft

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<tool id="colorGff" name="colorGff">
	<description> Add or replace a "color" tag to a gff format file. This tag is use by Artemis (the genome browser and annotation tool of Sanger Institute). </description>
		<command interpreter="perl"> 
			colorGff.pl -i $referenciesFile -c $RGBcolor > $outputFile  
		</command>

	<inputs>
		<param name="referenciesFile" type="data" label="Input File" format="gff" />
		<param name="RGBcolor" type="text" value="None" label="RGB color" help="Give 3 integer values (from 0 to 255, space separated), each of them corresponding to the combination of the Red, Green and Blue color space. Ex.:'255 0 100'" />
	</inputs>

	<outputs>
		<data format="gff" name="outputFile" label="[colorGff] Output File"/>
	</outputs>

        <tests>
                <test>
                        <param name="referenciesFile" value="colorGff_Reference.gff" />
                        <param name="RGBcolor" value="255 0 100" />
                        <output name="outputFile" file="colorGff_Result.gff" />
                </test>
        </tests>

	<help>
		
	</help>
</tool>