Mercurial > repos > climate > cdo_operations
comparison macros_operations.xml @ 0:d5355f6fa02b draft default tip
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo commit da614bb8e3e9b19a5167ff19b625a71d9976108a"
| author | climate |
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| date | Sat, 15 Jan 2022 23:21:03 +0000 |
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| -1:000000000000 | 0:d5355f6fa02b |
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| 1 <macros> | |
| 2 <xml name="stat_selection"> | |
| 3 <param name="stat" type="select" label="Select statistical function" multiple="false"> | |
| 4 <option value="min">minimum</option> | |
| 5 <option value="max">maximum</option> | |
| 6 <option value="sum">sum</option> | |
| 7 <option value="mean">mean</option> | |
| 8 <option value="avg">average</option> | |
| 9 <option value="var">variance</option> | |
| 10 <option value="std">standard deviation</option> | |
| 11 </param> | |
| 12 </xml> | |
| 13 <xml name="add_cdo_input"> | |
| 14 <param name="add_file" type="data" optional="true" label="Additional input file" format="netcdf"/> | |
| 15 </xml> | |
| 16 <xml name="cdo_option"> | |
| 17 <conditional name="option_type"> | |
| 18 <param name="add_opt" type="select" label="Provide cdo options" multiple="false"> | |
| 19 <option value="-a">Generate an absolute time axis (-a)</option> | |
| 20 <option value="--cmor">CMOR conform NetCDF output (--cmor)</option> | |
| 21 <option value="-f">-Output format (-f format)</option> | |
| 22 <option value="-g">-g grid</option> | |
| 23 <option value="-gf">-g grid filename</option> | |
| 24 <option value="-M">-Indicate that the I/O streams have missing values (-M)</option> | |
| 25 <option value="-m">Set the default missing value. Default is-9e+33 (-m missval)</option> | |
| 26 <option value="--percentile">Percentile method (--percentile method)</option> | |
| 27 <option value="--reduce_dim">Reduce NetCDF dimensions (--reduce_dim)</option> | |
| 28 <option value="-R">Convert GRIB1 data from reduced to regular grid (-R)</option> | |
| 29 <option value="--seed">Seed for a new sequence of pseudo-random numbers (--seed seed)</option> | |
| 30 <option value="--sortname">Alphanumeric sorting of NetCDF parameter names (--sortname)</option> | |
| 31 <option value="-r">Generate a relative time axis (-r)</option> | |
| 32 </param> | |
| 33 <when value="-a"/> | |
| 34 <when value="--cmor"/> | |
| 35 <when value="-f"> | |
| 36 <param name="output_format" type="select" label="Select output format" multiple="false"> | |
| 37 <option value="nc4">NetCDF-4 (HDF5)</option> | |
| 38 <option value="nc4c">NetCDF-4 classic</option> | |
| 39 <option value="nc5">NetCDF version 5</option> | |
| 40 </param> | |
| 41 </when> | |
| 42 <when value="-g"> | |
| 43 <param name="grid" type="text" label="Grid" help="(option -g grid)"/> | |
| 44 </when> | |
| 45 <when value="-gf"> | |
| 46 <param name="gridfile" type="data" label="Grid file" help="(option -g gridfile)" format="txt"/> | |
| 47 </when> | |
| 48 <when value="-M"/> | |
| 49 <when value="-m"> | |
| 50 <param name="missval" type="float" value="-9e+33" label="Set the default missing value"/> | |
| 51 </when> | |
| 52 <when value="--percentile"> | |
| 53 <param name="percentile" type="select" label="Percentile method"> | |
| 54 <option value="nrank">nrank</option> | |
| 55 <option value="nist">nist</option> | |
| 56 <option value="rtype8">rtype8</option> | |
| 57 <option value="numpy">numpy</option> | |
| 58 <option value="numpy_lower">numpy_lower</option> | |
| 59 <option value="numpy_higher">numpy_higher</option> | |
| 60 <option value="numpy_nearest">numpy_nearest</option> | |
| 61 </param> | |
| 62 </when> | |
| 63 <when value="--reduce_dim"/> | |
| 64 <when value="-R"/> | |
| 65 <when value="--seed"> | |
| 66 <param name="seed" type="float" value="0.0" label="Seed for a new sequence of pseudo-random numbers"/> | |
| 67 </when> | |
| 68 <when value="--sortname"/> | |
| 69 <when value="-r"/> | |
| 70 </conditional> | |
| 71 </xml> | |
| 72 <xml name="cdo_operator"> | |
| 73 <conditional name="operator"> | |
| 74 <param name="opt" type="select" label="Select cdo operator" multiple="false"> | |
| 75 <option value="copy">copy (Copy datasets)</option> | |
| 76 <option value="cat">cat (Concatenate datasets)</option> | |
| 77 <option value="replace">replace (Replace variables)</option> | |
| 78 <option value="duplicate">duplicate (Duplicates a dataset)</option> | |
| 79 <option value="mergegrid">mergegrid (Merge grid)</option> | |
| 80 <option value="merge">merge (Merge datasets with different fields)</option> | |
| 81 <option value="mergetime">mergetime (Merge datasets sorted by date and time)</option> | |
| 82 <option value="splitcode">splitcode (Split code numbers)</option> | |
| 83 <option value="splitparam">splitparam (Split parameter identifiers)</option> | |
| 84 <option value="splitname">splitname (Split variable names)</option> | |
| 85 <option value="splitlevel">splitlevel (Split levels)</option> | |
| 86 <option value="splitgrid">splitgrid (Split grids)</option> | |
| 87 <option value="splitzaxis">splitzaxis (Split z-axes)</option> | |
| 88 <option value="splittabnum">splittabnum (Split parameter table numbers)</option> | |
| 89 <option value="splithour">splithour (Split hours)</option> | |
| 90 <option value="splitday">splitday (Split days)</option> | |
| 91 <option value="splitseas">splitseas (Split seasons)</option> | |
| 92 <option value="splityear">splityear (Split years)</option> | |
| 93 <option value="splityearmon">splityearmon (Split in years and months)</option> | |
| 94 <option value="splitmon">splitmon (Split months)</option> | |
| 95 <option value="splitsel">splitsel (Split time selection)</option> | |
| 96 <option value="distgrid">distgrid (Distribute horizontal grid)</option> | |
| 97 <option value="collgrid">collgrid (Collect horizontal grid)</option> | |
| 98 <option value="select">select (Select all fields with parameters in a user given list.)</option> | |
| 99 <option value="delete">delete (Delete all fields with parameters in a user given list.)</option> | |
| 100 <option value="selname">selname (Select parameters by name)</option> | |
| 101 <option value="delname">delname (Delete parameters by name)</option> | |
| 102 <option value="seltimestep">seltimestep (Select timesteps)</option> | |
| 103 <option value="sellonlatbox">sellonlatbox (Select a latitude/longitude box)</option> | |
| 104 <option value="invertlat">invertlat (Invert latitudes)</option> | |
| 105 <option value="addc">addc (Add a constant)</option> | |
| 106 <option value="subc">subc (Substract a constant)</option> | |
| 107 <option value="mulc">mulc (Multiply with a constant)</option> | |
| 108 <option value="divc">divc (Divide with a constant)</option> | |
| 109 <option value="expr">expr (Evaluate expressions)</option> | |
| 110 <option value="ml2pl">ml2pl (Model to pressure level interpolation)</option> | |
| 111 <option value="ml2hl">ml2hl (Model to height level interpolation)</option> | |
| 112 <option value="intlevel">intlevel (Linear level interpolation)</option> | |
| 113 <option value="sp2gp">sp2gp (Spectral to gridpoint)</option> | |
| 114 <option value="gp2sp">gp2sp (Gridpoint to spectral)</option> | |
| 115 <option value="ens">Ensemble statistics</option> | |
| 116 <option value="zon">Zonal statistics</option> | |
| 117 <option value="tim">Time statistics</option> | |
| 118 <option value="vert">Vertical statistics</option> | |
| 119 <option value="day">Daily statistics</option> | |
| 120 <option value="year">Yearly statistics</option> | |
| 121 <option value="mon">Monthly statistics</option> | |
| 122 <option value="seas">Seasonal statistics</option> | |
| 123 <option value="fld">Statistical values over a field</option> | |
| 124 <option value="add">Add two fields </option> | |
| 125 <option value="sub">Subtract two fields </option> | |
| 126 <option value="mul">Multiply two fields </option> | |
| 127 <option value="div">Divide two fields </option> | |
| 128 <option value="min">Minimum of two fields </option> | |
| 129 <option value="max">Maximum of two fields </option> | |
| 130 <option value="setattribute">Set/modify attributes</option> | |
| 131 </param> | |
| 132 <when value="copy"> | |
| 133 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 134 </when> | |
| 135 <when value="cat"> | |
| 136 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 137 </when> | |
| 138 <when value="replace"> | |
| 139 <param name="add_file" type="data" multiple="true" min="0" max="2" label="Additional input file" format="netcdf"/> | |
| 140 </when> | |
| 141 <when value="duplicate"> | |
| 142 <param name="ndup" type="integer" label="Number of duplicates" value="2"/> | |
| 143 <expand macro="add_cdo_input"/> | |
| 144 </when> | |
| 145 <when value="mergegrid"> | |
| 146 <expand macro="add_cdo_input"/> | |
| 147 </when> | |
| 148 <when value="merge"> | |
| 149 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 150 </when> | |
| 151 <when value="mergetime"> | |
| 152 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 153 </when> | |
| 154 <when value="splitcode"> | |
| 155 <expand macro="add_cdo_input"/> | |
| 156 </when> | |
| 157 <when value="splitparam"> | |
| 158 <expand macro="add_cdo_input"/> | |
| 159 </when> | |
| 160 <when value="splitname"> | |
| 161 <expand macro="add_cdo_input"/> | |
| 162 </when> | |
| 163 <when value="splitlevel"> | |
| 164 <expand macro="add_cdo_input"/> | |
| 165 </when> | |
| 166 <when value="splitgrid"> | |
| 167 <expand macro="add_cdo_input"/> | |
| 168 </when> | |
| 169 <when value="splitzaxis"> | |
| 170 <expand macro="add_cdo_input"/> | |
| 171 </when> | |
| 172 <when value="splittabnum"> | |
| 173 <expand macro="add_cdo_input"/> | |
| 174 </when> | |
| 175 <when value="splithour"> | |
| 176 <expand macro="add_cdo_input"/> | |
| 177 </when> | |
| 178 <when value="splitday"> | |
| 179 <expand macro="add_cdo_input"/> | |
| 180 </when> | |
| 181 <when value="splitseas"> | |
| 182 <expand macro="add_cdo_input"/> | |
| 183 </when> | |
| 184 <when value="splityear"> | |
| 185 <expand macro="add_cdo_input"/> | |
| 186 </when> | |
| 187 <when value="splityearmon"> | |
| 188 <expand macro="add_cdo_input"/> | |
| 189 </when> | |
| 190 <when value="splitmon"> | |
| 191 <expand macro="add_cdo_input"/> | |
| 192 </when> | |
| 193 <when value="splitsel"> | |
| 194 <param name="nset" type="integer" value="0" label="Number of input timesteps for each output file"/> | |
| 195 <param name="noffset" type="integer" optional="true" label="Number of input timesteps skipped before the first timestep range (optional)"/> | |
| 196 <param name="nskip" type="integer" optional="true" label="Number of input timesteps skipped between timestep ranges (optional)"/> | |
| 197 <expand macro="add_cdo_input"/> | |
| 198 </when> | |
| 199 <when value="distgrid"> | |
| 200 <param name="nx" type="integer" value="1" label="Number of regions in x direction, or number of pieces for unstructured grids"/> | |
| 201 <param name="ny" type="integer" label="Number of regions in y direction" value="1"/> | |
| 202 <expand macro="add_cdo_input"/> | |
| 203 </when> | |
| 204 <when value="collgrid"> | |
| 205 <param name="nx" type="integer" label="Number of regions in x direction" optional="true"/> | |
| 206 <param name="names" type="text" label="Comma-separated list of variable names" optional="true"/> | |
| 207 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 208 </when> | |
| 209 <when value="select"> | |
| 210 <param name="params" type="text" value="" label="Parameters for selection"/> | |
| 211 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 212 </when> | |
| 213 <when value="delete"> | |
| 214 <param name="params" type="text" label="Parameters for deletion"/> | |
| 215 <param name="add_file" type="data" multiple="true" min="0" label="Additional input file" format="netcdf"/> | |
| 216 </when> | |
| 217 <when value="selname"> | |
| 218 <param name="params" type="text" value="" label="Parameters for selection"/> | |
| 219 <expand macro="add_cdo_input"/> | |
| 220 </when> | |
| 221 <when value="delname"> | |
| 222 <param name="params" type="text" value="" label="Parameters for selection"/> | |
| 223 <expand macro="add_cdo_input"/> | |
| 224 </when> | |
| 225 <when value="seltimestep"> | |
| 226 <param name="params" type="text" value="" label="Timesteps for selection"/> | |
| 227 <expand macro="add_cdo_input"/> | |
| 228 </when> | |
| 229 <when value="sellonlatbox"> | |
| 230 <param name="params" type="text" value="" label="Parameters for latitude/longitude box in the form of lon1,lon2,lat1,lat2)"/> | |
| 231 <expand macro="add_cdo_input"/> | |
| 232 </when> | |
| 233 <when value="invertlat"> | |
| 234 <expand macro="add_cdo_input"/> | |
| 235 </when> | |
| 236 <when value="addc"> | |
| 237 <param name="const_value" type="float" label="Constant value to add to the fields" value="1"/> | |
| 238 <expand macro="add_cdo_input"/> | |
| 239 </when> | |
| 240 <when value="subc"> | |
| 241 <param name="const_value" type="float" label="Constant value to substract to the fields" value="1"/> | |
| 242 <expand macro="add_cdo_input"/> | |
| 243 </when> | |
| 244 <when value="mulc"> | |
| 245 <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> | |
| 246 <expand macro="add_cdo_input"/> | |
| 247 </when> | |
| 248 <when value="divc"> | |
| 249 <param name="const_value" type="float" label="Constant value to scale the fields" value="1"/> | |
| 250 <expand macro="add_cdo_input"/> | |
| 251 </when> | |
| 252 <when value="expr"> | |
| 253 <param name="params" type="text" value="" label="Expression for evaluation"/> | |
| 254 <expand macro="add_cdo_input"/> | |
| 255 </when> | |
| 256 <when value="ml2pl"> | |
| 257 <param name="params" type="text" value="" label="Pressure levels (comma separated)"/> | |
| 258 <expand macro="add_cdo_input"/> | |
| 259 </when> | |
| 260 <when value="ml2hl"> | |
| 261 <param name="params" type="text" value="" label="Height levels (comma separated)"/> | |
| 262 <expand macro="add_cdo_input"/> | |
| 263 </when> | |
| 264 <when value="intlevel"> | |
| 265 <param name="params" type="text" value="" label="Levels (comma separated)"/> | |
| 266 <expand macro="add_cdo_input"/> | |
| 267 </when> | |
| 268 <when value="sp2gp"> | |
| 269 <param name="trunc" type="integer" optional="true" value="" label="New spectral resolution"/> | |
| 270 <expand macro="add_cdo_input"/> | |
| 271 </when> | |
| 272 <when value="gp2sp"> | |
| 273 <param name="trunc" type="integer" optional="true" label="New spectral resolution"/> | |
| 274 <expand macro="add_cdo_input"/> | |
| 275 </when> | |
| 276 <when value="ens"> | |
| 277 <expand macro="stat_selection" /> | |
| 278 <expand macro="add_cdo_input"/> | |
| 279 </when> | |
| 280 <when value="zon"> | |
| 281 <expand macro="stat_selection" /> | |
| 282 <expand macro="add_cdo_input"/> | |
| 283 </when> | |
| 284 <when value="tim"> | |
| 285 <expand macro="stat_selection" /> | |
| 286 <expand macro="add_cdo_input"/> | |
| 287 </when> | |
| 288 <when value="vert"> | |
| 289 <expand macro="stat_selection" /> | |
| 290 <expand macro="add_cdo_input"/> | |
| 291 </when> | |
| 292 <when value="day"> | |
| 293 <expand macro="stat_selection" /> | |
| 294 <expand macro="add_cdo_input"/> | |
| 295 </when> | |
| 296 <when value="year"> | |
| 297 <expand macro="stat_selection" /> | |
| 298 <expand macro="add_cdo_input"/> | |
| 299 </when> | |
| 300 <when value="mon"> | |
| 301 <expand macro="stat_selection" /> | |
| 302 <expand macro="add_cdo_input"/> | |
| 303 </when> | |
| 304 <when value="seas"> | |
| 305 <expand macro="stat_selection" /> | |
| 306 <expand macro="add_cdo_input"/> | |
| 307 </when> | |
| 308 <when value="fld"> | |
| 309 <expand macro="stat_selection" /> | |
| 310 <expand macro="add_cdo_input"/> | |
| 311 </when> | |
| 312 <when value="add"> | |
| 313 <expand macro="add_cdo_input"/> | |
| 314 </when> | |
| 315 <when value="sub"> | |
| 316 <expand macro="add_cdo_input"/> | |
| 317 </when> | |
| 318 <when value="mul"> | |
| 319 <expand macro="add_cdo_input"/> | |
| 320 </when> | |
| 321 <when value="div"> | |
| 322 <expand macro="add_cdo_input"/> | |
| 323 </when> | |
| 324 <when value="min"> | |
| 325 <expand macro="add_cdo_input"/> | |
| 326 </when> | |
| 327 <when value="max"> | |
| 328 <expand macro="add_cdo_input"/> | |
| 329 </when> | |
| 330 <when value="setattribute"> | |
| 331 <param name="attr_file" type="data" format="txt" label="Text file containing the list of attributes (one per line)"/> | |
| 332 <expand macro="add_cdo_input"/> | |
| 333 </when> | |
| 334 </conditional> | |
| 335 </xml> | |
| 336 </macros> |