Mercurial > repos > climate > climate_stripes
comparison climate-stripes.xml @ 0:fec3147b0206 draft
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit aa08ea46712c1cfbaac2e6fcd07c93097751cad3"
author | climate |
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date | Sat, 05 Oct 2019 17:03:08 -0400 |
parents | |
children | c6f2435d680b |
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1 <tool id="climate_stripes" name="climate stripes" version="1.0.0"> | |
2 <description>from timeseries</description> | |
3 <requirements> | |
4 <requirement type="package" version="3">python</requirement> | |
5 <requirement type="package" version="3.1.1">matplotlib</requirement> | |
6 <requirement type="package" version="0.25.1">pandas</requirement> | |
7 </requirements> | |
8 <command detect_errors="exit_code"><![CDATA[ | |
9 python3 '$__tool_directory__/climate_stripes.py' | |
10 '$ifilename' '$variable' | |
11 --cmap '$adv.colormap' | |
12 #if str($title).strip() | |
13 --title '$title' | |
14 #end if | |
15 #if str($adv.xname).strip() | |
16 --xname '$adv.xname' | |
17 #end if | |
18 #if str($adv.format_date).strip() | |
19 --format_date '$adv.format_date' | |
20 #end if | |
21 #if str($adv.format_plot).strip() | |
22 --format_plot '$adv.format_plot' | |
23 #end if | |
24 --output image.png | |
25 ]]></command> | |
26 <inputs> | |
27 <param name="ifilename" type="data" format="tabular" label="timeseries to plot"></param> | |
28 <param name="variable" type="text" value="global" label="column name to use for plotting" /> | |
29 <param name="title" type="text" value="" label="plot title" /> | |
30 <section name="adv" title="Advanced Options" expanded="false"> | |
31 <param name="xname" type="text" value="" label="column name to use for x-axis" /> | |
32 <param name="format_date" type="text" value="" label="format for input date/time column" /> | |
33 <param name="format_plot" type="text" value="" label="format for plotting dates on the x-axis" /> | |
34 <param name="colormap" type="select"> | |
35 <option value="Accent">Accent</option> | |
36 <option value="Blues">Blues</option> | |
37 <option value="BrBG">BrBG</option> | |
38 <option value="BuGn">BuGn</option> | |
39 <option value="BuPu">BuPu</option> | |
40 <option value="CMRmap">CMRmap</option> | |
41 <option value="Dark2">Dark2</option> | |
42 <option value="GnBu">GnBu</option> | |
43 <option value="Greens">Greens</option> | |
44 <option value="Greys">Greys</option> | |
45 <option value="OrRd">OrRd</option> | |
46 <option value="Oranges">Oranges</option> | |
47 <option value="PRGn">PRGn</option> | |
48 <option value="Paired">Paired</option> | |
49 <option value="Pastel1">Pastel1</option> | |
50 <option value="Pastel2">Pastel2</option> | |
51 <option value="PiYG">PiYG</option> | |
52 <option value="PuBu">PuBu</option> | |
53 <option value="PuBuGn">PuBuGn</option> | |
54 <option value="PuOr">PuOr</option> | |
55 <option value="PuRd">PuRd</option> | |
56 <option value="Purples">Purples</option> | |
57 <option value="RdBu">RdBu</option> | |
58 <option value="RdGy">RdGy</option> | |
59 <option value="RdPu">RdPu</option> | |
60 <option value="RdBu_r" selected="true">RdBu_r</option> | |
61 <option value="RdGy_r">RdGy_r</option> | |
62 <option value="RdPu_r">RdPu_r</option> | |
63 <option value="RdYlBu">RdYlBu</option> | |
64 <option value="RdYlGn">RdYlGn</option> | |
65 <option value="Reds">Reds</option> | |
66 <option value="Set1">Set1</option> | |
67 <option value="Set2">Set2</option> | |
68 <option value="Set3">Set3</option> | |
69 <option value="Spectral">Spectral</option> | |
70 <option value="Wistia">Wistia</option> | |
71 <option value="YlGn">YlGn</option> | |
72 <option value="YlGnBu">YlGnBu</option> | |
73 <option value="YlOrBr">YlOrBr</option> | |
74 <option value="YlOrRd">YlOrRd</option> | |
75 <option value="afmhot">afmhot</option> | |
76 <option value="autumn">autumn</option> | |
77 <option value="binary">binary</option> | |
78 <option value="bone">bone</option> | |
79 <option value="brg">brg</option> | |
80 <option value="bwr">bwr</option> | |
81 <option value="cool">cool</option> | |
82 <option value="coolwarm">coolwarm</option> | |
83 <option value="copper">copper</option> | |
84 <option value="cubehelix">cubehelix</option> | |
85 <option value="flag">flag</option> | |
86 <option value="gist_earth">gist_earth</option> | |
87 <option value="gist_gray">gist_gray</option> | |
88 <option value="gist_heat">gist_heat</option> | |
89 <option value="gist_ncar">gist_ncar</option> | |
90 <option value="gist_rainbow">gist_rainbow</option> | |
91 <option value="gist_stern">gist_stern</option> | |
92 <option value="gist_yarg">gist_yarg</option> | |
93 <option value="gnuplot">gnuplot</option> | |
94 <option value="gnuplot2">gnuplot2</option> | |
95 <option value="gray">gray</option> | |
96 <option value="hot">hot</option> | |
97 <option value="hsv">hsv</option> | |
98 <option value="jet">jet</option> | |
99 <option value="nipy_spectral">nipy_spectral</option> | |
100 <option value="ocean">ocean</option> | |
101 <option value="pink">pink</option> | |
102 <option value="prism">prism</option> | |
103 <option value="rainbow">rainbow</option> | |
104 <option value="seismic">seismic</option> | |
105 <option value="spring">spring</option> | |
106 <option value="summer">summer</option> | |
107 <option value="tab10">tab10</option> | |
108 <option value="tab20">tab20</option> | |
109 <option value="tab20b">tab20b</option> | |
110 <option value="tab20c">tab20c</option> | |
111 <option value="terrain">terrain</option> | |
112 <option value="winter">winter</option> | |
113 </param> | |
114 </section> | |
115 </inputs> | |
116 <outputs> | |
117 <data name="ofilename" format="png" from_work_dir="image.png"/> | |
118 </outputs> | |
119 <tests> | |
120 <test> | |
121 <param name="ifilename" value="T2Mclimatology.txt" /> | |
122 <param name="variable" value="global" /> | |
123 <output name="ofilename" ftype="png" file="T2Mstripes.png" compare="sim_size" delta="50"/> | |
124 </test> | |
125 <test> | |
126 <param name="ifilename" value="T2Mclimatology.txt" /> | |
127 <param name="variable" value="global" /> | |
128 <param name="title" value="Surface Temperature stripes (1979-2019)" /> | |
129 <param name="colormap" value="OrRd" /> | |
130 <param name="xname" value="Month" /> | |
131 <param name="format_date" value="XYXm" /> | |
132 <param name="format_plot" value="XY" /> | |
133 <output name="ofilename" ftype="png" file="T2Mstripes_with_axis.png" compare="sim_size" delta="50"/> | |
134 </test> | |
135 </tests> | |
136 <help><![CDATA[ | |
137 | |
138 **Climate stripes** | |
139 ========================================= | |
140 | |
141 This tool generate stripes from timeseries and is often used to generate warming stripes. | |
142 | |
143 | |
144 .. class:: infomark | |
145 | |
146 The wrappers aims at creating stripes from a timeseries. | |
147 The input file must be in tabular format and must contain at least one column that is used | |
148 for creating stripes. By default, no title and no axis are plotted. An additional column | |
149 can be specified for date/time and its date and time format must then be specified | |
150 with an additional options. | |
151 | |
152 **What it does** | |
153 ---------------- | |
154 | |
155 This tools creates an image (png format) corresponding to the visualization of a timeseries as | |
156 stripes (see https://www.climate-lab-book.ac.uk/2018/warming-stripes/). | |
157 By default, the colormap is ``RdBu_r`` and no axis nor title are plotted. These settings can be | |
158 changed in *Advanced settings*. | |
159 ]]></help> | |
160 <citations> | |
161 </citations> | |
162 </tool> |