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comparison ctsm-fates.xml @ 3:efaa93ed5a79 draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
author climate
date Thu, 17 Dec 2020 14:33:35 +0000
parents 74b675f9d7c8
children
comparison
equal deleted inserted replaced
2:b525b88bc941 3:efaa93ed5a79
1 <tool id="ctsm_fates" name="CTSM/FATES-EMERALD" version="2.0.1"> 1 <tool id="ctsm_fates" name="CTSM/FATES-EMERALD" version="2.0.1.1">
2 <description>Functionally Assembled Terrestrial Ecosystem Simulator</description> 2 <description>Functionally Assembled Terrestrial Ecosystem Simulator</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.0.1">fates-emerald</requirement> 4 <requirement type="package" version="2.0.1">fates-emerald</requirement>
5 <requirement type="package" version="1.32">tar</requirement> 5 <requirement type="package" version="1.32">tar</requirement>
6 <requirement type="package" version="2.35">binutils</requirement> 6 <requirement type="package" version="2.35">binutils</requirement>
194 </conditional> 194 </conditional>
195 </section> 195 </section>
196 </inputs> 196 </inputs>
197 <outputs> 197 <outputs>
198 <collection name="history_files" type="list" label="${tool.name} on ${inputdata.name} (history file)"> 198 <collection name="history_files" type="list" label="${tool.name} on ${inputdata.name} (history file)">
199 <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true" format="netcdf"/> 199 <discover_datasets pattern="__name__" directory="output_dir" visible="true" format="netcdf"/>
200 </collection> 200 </collection>
201 <data name="atm_log" format="txt" label="${tool.name} on ${inputdata.name} (atm.log)"/> 201 <data name="atm_log" format="txt" label="${tool.name} on ${inputdata.name} (atm.log)"/>
202 <data name="cesm_log" format="txt" label="${tool.name} on ${inputdata.name} (cesm.log)"/> 202 <data name="cesm_log" format="txt" label="${tool.name} on ${inputdata.name} (cesm.log)"/>
203 <data name="cpl_log" format="txt" label="${tool.name} on ${inputdata.name} (cpl.log)"/> 203 <data name="cpl_log" format="txt" label="${tool.name} on ${inputdata.name} (cpl.log)"/>
204 <data name="lnd_log" format="txt" label="${tool.name} on ${inputdata.name} (lnd.log)"/> 204 <data name="lnd_log" format="txt" label="${tool.name} on ${inputdata.name} (lnd.log)"/>
215 <param name="casename" value="test" /> 215 <param name="casename" value="test" />
216 <param name="resolution" value="1x1_ALP1" /> 216 <param name="resolution" value="1x1_ALP1" />
217 <param name="run_startdate" value="2000-01-01" /> 217 <param name="run_startdate" value="2000-01-01" />
218 <param name="stop_option" value="nsteps" /> 218 <param name="stop_option" value="nsteps" />
219 <param name="stopn" value="1" /> 219 <param name="stopn" value="1" />
220 <output name="atm_log" ftype="txt" file="atm.log" compare="sim_size" delta="1000"> 220 <output name="atm_log" ftype="txt">
221 <assert_contents> 221 <assert_contents>
222 <has_text text="(datm_comp_final) atm: end of main integration loop" /> 222 <has_text text="(datm_comp_final) atm: end of main integration loop" />
223 </assert_contents> 223 </assert_contents>
224 </output> 224 </output>
225 <output name="cesm_log" ftype="txt" file="cesm.log" compare="sim_size" delta="1000"> 225 <output name="cesm_log" ftype="txt">
226 <assert_contents> 226 <assert_contents>
227 <has_text text="pes participating in computation for CLM" /> 227 <has_text text="pes participating in computation for CLM" />
228 </assert_contents> 228 </assert_contents>
229 </output> 229 </output>
230 <output name="cpl_log" ftype="txt" file="cpl.log" compare="sim_size" delta="1000"> 230 <output name="cpl_log" ftype="txt">
231 <assert_contents> 231 <assert_contents>
232 <has_text text="SUCCESSFUL TERMINATION" /> 232 <has_text text="SUCCESSFUL TERMINATION" />
233 </assert_contents> 233 </assert_contents>
234 </output> 234 </output>
235 <output name="lnd_log" ftype="txt" file="lnd.log" compare="sim_size" delta="1000"> 235 <output name="lnd_log" ftype="txt">
236 <assert_contents> 236 <assert_contents>
237 <has_text text="Successfully" /> 237 <has_text text="Successfully" />
238 </assert_contents> 238 </assert_contents>
239 </output> 239 </output>
240 <output name="rof_log" ftype="txt" file="rof.log" compare="sim_size" delta="1000"> 240 <output name="rof_log" ftype="txt">
241 <assert_contents> 241 <assert_contents>
242 <has_text text="MOSART model initialization" /> 242 <has_text text="MOSART model initialization" />
243 </assert_contents> 243 </assert_contents>
244 </output> 244 </output>
245 <output name="work" ftype="tar" file="workdir.tar" compare="sim_size" delta="1000">
246 <assert_contents>
247 <has_size value="0"/>
248 </assert_contents>
249 </output>
250 <output name="restart" ftype="tar" file="restart.tar" compare="sim_size" delta="100" /> 245 <output name="restart" ftype="tar" file="restart.tar" compare="sim_size" delta="100" />
251 <output name="rinfo" ftype="txt" file="restart_info.txt" compare="sim_size" delta="1000"> 246 <output name="rinfo" ftype="txt">
252 <assert_contents> 247 <assert_contents>
253 <has_text text="datm.r.2000-01-01-01800.nc" /> 248 <has_text text="datm.r.2000-01-01-01800.nc" />
254 <has_text text="datm.rs1.2000-01-01-01800.bin" /> 249 <has_text text="datm.rs1.2000-01-01-01800.bin" />
255 <has_text text="cpl.r.2000-01-01-01800.nc" /> 250 <has_text text="cpl.r.2000-01-01-01800.nc" />
256 <has_text text="clm2.r.2000-01-01-01800.nc" /> 251 <has_text text="clm2.r.2000-01-01-01800.nc" />
257 </assert_contents> 252 </assert_contents>
258 </output> 253 </output>
259 <output_collection name="history_files" count="0"> 254 <output_collection name="history_files" count="0">
260 </output_collection> 255 </output_collection>
261 </test> 256 </test>
257 <test>
258 <param name="inputdata" value="inputdata_test.tar" />
259 <param name="casename" value="one_month" />
260 <param name="resolution" value="1x1_ALP1" />
261 <param name="stop_option" value="nmonths" />
262 <param name="stopn" value="1" />
263 <output name="atm_log" ftype="txt">
264 <assert_contents>
265 <has_text text="(datm_comp_final) atm: end of main integration loop" />
266 </assert_contents>
267 </output>
268 <output name="cesm_log" ftype="txt">
269 <assert_contents>
270 <has_text text="pes participating in computation for CLM" />
271 </assert_contents>
272 </output>
273 <output name="cpl_log" ftype="txt">
274 <assert_contents>
275 <has_text text="SUCCESSFUL TERMINATION" />
276 </assert_contents>
277 </output>
278 <output name="lnd_log" ftype="txt">
279 <assert_contents>
280 <has_text text="Successfully" />
281 </assert_contents>
282 </output>
283 <output name="rof_log" ftype="txt">
284 <assert_contents>
285 <has_text text="MOSART model initialization" />
286 </assert_contents>
287 </output>
288 <output name="restart" ftype="tar">
289 <assert_contents>
290 <has_size value="6348800" delta="5000"/>
291 </assert_contents>
292 </output>
293
294 <output name="rinfo" ftype="txt">
295 <assert_contents>
296 <has_text text="datm.r.2000-02-01-00000.nc" />
297 <has_text text="datm.rs1.2000-02-01-00000.bin" />
298 <has_text text="cpl.r.2000-02-01-00000.nc" />
299 <has_text text="clm2.r.2000-02-01-00000.nc" />
300 </assert_contents>
301 </output>
302 <output_collection name="history_files" count="1">
303 </output_collection>
304 </test>
305
262 </tests> 306 </tests>
263 <help><![CDATA[ 307 <help><![CDATA[
264 308
265 **The Functionally Assembled Terrestrial Ecosystem Simulator (FATES)** 309 **The Functionally Assembled Terrestrial Ecosystem Simulator (FATES)**
266 ========================================================================== 310 ==========================================================================