# HG changeset patch
# User climate
# Date 1603312235 0
# Node ID 8c7414c07367e99c2828e7a363cd5589cb79f62e
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
diff -r 000000000000 -r 8c7414c07367 config
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/config Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,2 @@
+[main]
+CIME_MODEL=cesm
diff -r 000000000000 -r 8c7414c07367 config_compilers.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/config_compilers.xml Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,25 @@
+
+
+
+
+
+ mpifort
+ x86_64-conda_cos6-linux-gnu-ar
+ x86_64-conda_cos6-linux-gnu-gfortran
+ x86_64-conda_cos6-linux-gnu-cc
+ x86_64-conda_cos6-linux-gnu-c++
+ mpifort
+ mpicc
+ mpicxx
+ $ENV{CONDA_PREFIX}
+
+ -O2
+ -fdefault-real-8
+ -finit-local-zero
+
+
+ -L$(NETCDF_PATH)/lib -lnetcdff -lnetcdf -ldl
+ -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -lgomp -lpthread -lm -fopenmp
+
+
+
diff -r 000000000000 -r 8c7414c07367 config_machines.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/config_machines.xml Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,42 @@
+
+
+
+
+ VM
+ x4 CPUs
+ Gold Centos 7
+
+ UNSET
+ LINUX
+ UNSET
+ gnu
+ mpich
+ UNSET
+ $ENV{HOME}/work
+ $ENV{HOME}/inputdata
+ $ENV{HOME}/inputdata/atm/datm7
+ $ENV{HOME}/archive/$CASE
+ UNSET
+ UNSET
+ make
+ 1
+ none
+ nobody
+ 1
+ 1
+ FALSE
+
+ nohup mpiexec
+
+ -np $TOTALPES
+
+
+
+
+ 64M
+
+
+ -1
+
+
+
diff -r 000000000000 -r 8c7414c07367 ctsm-fates.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctsm-fates.xml Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,325 @@
+
+ Functionally Assembled Terrestrial Ecosystem Simulator
+
+ fates-emerald
+ tar
+ binutils
+ python
+ perl-xml-libxml
+
+ $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
+ ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
+ ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
+ #end if
+ #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
+ ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
+ #end if
+ ./xmlchange STOP_N=$adv_period.stopn &&
+ ./xmlchange STOP_OPTION=$adv_period.stop_option &&
+ ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
+ ./xmlchange DOUT_S=FALSE &&
+ cp '$user_nl_clm_customization' user_nl_clm &&
+ ./case.build >> $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
+
+ #end if
+ ./case.submit >> $case_info 2>&1 &&
+ mkdir -p restart &&
+ (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
+ (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
+ cd restart &&
+ tar cvf $restart . &&
+ cd .. &&
+ (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
+ (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
+ cat '../work/$casename/run/'atm.log.* >> $atm_log &&
+ cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
+ cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
+ cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
+ cat '../work/$casename/run/'rof.log.* >> $rof_log ) ||
+ (printf "Case failed" && tar cf $work \${HOME}/work)
+ ]]>
+
+
+
+
+
+
+
+ ^[A-Za-z][A-Za-z0-9]*
+
+
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+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
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+
+
+
+
+
+
+ topic_3855
+ topic_3318
+ topic_3050
+ topic_0610
+
+
+ operation_3946
+ operation_2426
+
+
diff -r 000000000000 -r 8c7414c07367 ctsm-fates.xml.SLEEP
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctsm-fates.xml.SLEEP Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,332 @@
+
+ Functionally Assembled Terrestrial Ecosystem Simulator
+
+ fates-emerald
+ tar
+ binutils
+ python
+ perl-xml-libxml
+
+ $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
+ ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
+ ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
+ #end if
+ #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
+ ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
+ #end if
+ ./xmlchange STOP_N=$adv_period.stopn &&
+ ./xmlchange STOP_OPTION=$adv_period.stop_option &&
+ ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
+ ./xmlchange DOUT_S=FALSE &&
+ cp '$user_nl_clm_customization' user_nl_clm &&
+ ./case.build >> $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
+
+ #end if
+ ./case.submit >> $case_info 2>&1 &&
+ mkdir -p restart &&
+ (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
+ (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
+ cd restart &&
+ tar cvf $restart . &&
+ cd .. &&
+ (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
+ (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
+ cat '../work/$casename/run/'atm.log.* >> $atm_log &&
+ cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
+ cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
+ cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
+ cat '../work/$casename/run/'rof.log.* >> $rof_log &&
+ sleep 1000 ) ||
+ (printf "Case failed" && tar cf $work \${HOME}/work)
+ ]]>
+
+
+
+
+
+
+
+ ^[A-Za-z][A-Za-z0-9]*
+
+
+
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+
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+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
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+
+
+
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+
+
+
+
+
+
+
+
+
+
+
+
+
+ topic_3855
+ topic_3318
+ topic_3050
+ topic_0610
+
+
+ operation_3946
+ operation_2426
+
+
diff -r 000000000000 -r 8c7414c07367 ctsm-fates.xml.TRIC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctsm-fates.xml.TRIC Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,338 @@
+
+ Functionally Assembled Terrestrial Ecosystem Simulator
+
+ fates-emerald
+ tar
+ python
+ perl-xml-libxml
+
+ $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
+ ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
+ ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
+ #end if
+ #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
+ ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
+ #end if
+ ./xmlchange STOP_N=$adv_period.stopn &&
+ ./xmlchange STOP_OPTION=$adv_period.stop_option &&
+ ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
+ ./xmlchange DOUT_S=FALSE &&
+ cp '$user_nl_clm_customization' user_nl_clm &&
+ ./case.build >> $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
+
+ #end if
+ ./case.submit >> $case_info 2>&1 &&
+ mkdir -p restart &&
+ (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
+ (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
+ cd restart &&
+ tar cvf $restart . &&
+ cd .. &&
+ (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
+ (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
+ cat '../work/$casename/run/'atm.log.* >> $atm_log &&
+ cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
+ cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
+ cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
+ cat '../work/$casename/run/'rof.log.* >> $rof_log ) ||
+ (printf "Case failed" && tar cf $work \${HOME}/work)
+ ]]>
+
+
+
+
+
+
+
+ ^[A-Za-z][A-Za-z0-9]*
+
+
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+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
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+
+
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+
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+ topic_3855
+ topic_3318
+ topic_3050
+ topic_0610
+
+
+ operation_3946
+ operation_2426
+
+
diff -r 000000000000 -r 8c7414c07367 ctsm-fates.xml.binutils
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctsm-fates.xml.binutils Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,334 @@
+
+ Functionally Assembled Terrestrial Ecosystem Simulator
+
+ fates-emerald
+ tar
+ binutils
+ python
+ perl-xml-libxml
+
+ $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
+ ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
+ ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
+ #end if
+ #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
+ ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
+ #end if
+ ./xmlchange STOP_N=$adv_period.stopn &&
+ ./xmlchange STOP_OPTION=$adv_period.stop_option &&
+ ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
+ ./xmlchange DOUT_S=FALSE &&
+ cp '$user_nl_clm_customization' user_nl_clm &&
+ ./case.build >> $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
+
+ #end if
+ ./case.submit >> $case_info 2>&1 &&
+ mkdir -p restart &&
+ (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
+ (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
+ cd restart &&
+ tar cvf $restart . &&
+ cd .. &&
+ (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
+ (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
+ cat '../work/$casename/run/'atm.log.* >> $atm_log &&
+ cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
+ cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
+ cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
+ cat '../work/$casename/run/'rof.log.* >> $rof_log ) ||
+ (printf "Case failed" && tar cf $work \${HOME}/work)
+ ]]>
+
+
+
+
+
+
+
+ ^[A-Za-z][A-Za-z0-9]*
+
+
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+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
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+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
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+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
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+
+
+
+
+
+
+
+ topic_3855
+ topic_3318
+ topic_3050
+ topic_0610
+
+
+ operation_3946
+ operation_2426
+
+
diff -r 000000000000 -r 8c7414c07367 ctsm-fates.xml_detail
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctsm-fates.xml_detail Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,331 @@
+
+ Functionally Assembled Terrestrial Ecosystem Simulator
+
+ fates-emerald
+ tar
+ binutils
+ python
+ perl-xml-libxml
+
+ $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
+ ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
+ ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
+ #end if
+ #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
+ ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
+ #end if
+ ./xmlchange STOP_N=$adv_period.stopn &&
+ ./xmlchange STOP_OPTION=$adv_period.stop_option &&
+ ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
+ ./xmlchange DOUT_S=FALSE &&
+ cp '$user_nl_clm_customization' user_nl_clm &&
+ ./case.build >> $case_info 2>&1 &&
+ #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
+ tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
+
+ #end if
+ ./case.submit >> $case_info 2>&1 &&
+ mkdir -p restart &&
+ (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
+ (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
+ (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
+ cd restart &&
+ tar cvf $restart . &&
+ cd .. &&
+ (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
+ (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
+ cat '../work/$casename/run/'atm.log.* >> $atm_log &&
+ cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
+ cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
+ cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
+ cat '../work/$casename/run/'rof.log.* >> $rof_log ) ||
+ (printf "Case failed" && tar cf $work \${HOME}/work)
+ ]]>
+
+
+
+
+
+
+
+ ^[A-Za-z][A-Za-z0-9]*
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+ (^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))
+
+
+
+
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+
+
+ topic_3855
+ topic_3318
+ topic_3050
+ topic_0610
+
+
+ operation_3946
+ operation_2426
+
+
diff -r 000000000000 -r 8c7414c07367 test-data/atm.log
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/atm.log Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,240 @@
+(datm_comp_init) decomp = 1d
+(datm_comp_init) iradsw = 1
+(datm_comp_init) factorFn = null
+(datm_comp_init) restfilm = undefined
+(datm_comp_init) restfils = undefined
+(datm_comp_init) presaero = T
+(datm_comp_init) force_prognostic_true = F
+(datm_comp_init) wiso_datm = F
+(datm_comp_init) inst_index = 1
+(datm_comp_init) inst_name = ATM
+(datm_comp_init) inst_suffix =
+(shr_strdata_readnml) reading input namelist file: datm_in
+(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Solar
+(shr_file_freeUnit) unit 97 was not in use
+(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Precip
+(shr_file_freeUnit) unit 97 was not in use
+(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.TPQW
+(shr_file_freeUnit) unit 97 was not in use
+(shr_stream_init) Reading file datm.streams.txt.presaero.clim_2000
+(shr_file_freeUnit) unit 97 was not in use
+(shr_stream_init) Reading file datm.streams.txt.topo.observed
+(shr_file_freeUnit) unit 97 was not in use
+(datm_comp_init) datm datamode = CLMNCEP
+ (shr_strdata_init_streams) stream 1
+ (shr_strdata_init_streams) filePath = 1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
+ (shr_strdata_init_streams) fileName = 1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ (shr_strdata_init_streams) timeName = 1 time
+ (shr_strdata_init_streams) lonName = 1 xc
+ (shr_strdata_init_streams) latName = 1 yc
+ (shr_strdata_init_streams) hgtName = 1 unknownname
+ (shr_strdata_init_streams) maskName = 1 mask
+ (shr_strdata_init_streams) areaName = 1 area
+ (shr_strdata_init_streams) stream 2
+ (shr_strdata_init_streams) filePath = 2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
+ (shr_strdata_init_streams) fileName = 2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ (shr_strdata_init_streams) timeName = 2 time
+ (shr_strdata_init_streams) lonName = 2 xc
+ (shr_strdata_init_streams) latName = 2 yc
+ (shr_strdata_init_streams) hgtName = 2 unknownname
+ (shr_strdata_init_streams) maskName = 2 mask
+ (shr_strdata_init_streams) areaName = 2 area
+ (shr_strdata_init_streams) stream 3
+ (shr_strdata_init_streams) filePath = 3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
+ (shr_strdata_init_streams) fileName = 3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ (shr_strdata_init_streams) timeName = 3 time
+ (shr_strdata_init_streams) lonName = 3 xc
+ (shr_strdata_init_streams) latName = 3 yc
+ (shr_strdata_init_streams) hgtName = 3 unknownname
+ (shr_strdata_init_streams) maskName = 3 mask
+ (shr_strdata_init_streams) areaName = 3 area
+ (shr_strdata_init_streams) stream 4
+ (shr_strdata_init_streams) filePath = 4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/
+ (shr_strdata_init_streams) fileName = 4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
+ (shr_strdata_init_streams) timeName = 4 time
+ (shr_strdata_init_streams) lonName = 4 lon
+ (shr_strdata_init_streams) latName = 4 lat
+ (shr_strdata_init_streams) hgtName = 4 unknownname
+ (shr_strdata_init_streams) maskName = 4 mask
+ (shr_strdata_init_streams) areaName = 4 area
+ (shr_strdata_init_streams) stream 5
+ (shr_strdata_init_streams) filePath = 5 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/
+ (shr_strdata_init_streams) fileName = 5 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc
+ (shr_strdata_init_streams) timeName = 5 time
+ (shr_strdata_init_streams) lonName = 5 LONGXY
+ (shr_strdata_init_streams) latName = 5 LATIXY
+ (shr_strdata_init_streams) hgtName = 5 unknownname
+ (shr_strdata_init_streams) maskName = 5 mask
+ (shr_strdata_init_streams) areaName = 5 area
+(shr_strdata_print) ----------------------------------------------------------
+(shr_strdata_print) name = ATM data
+(shr_strdata_print) dataMode = CLMNCEP
+(shr_strdata_print) domainFile = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+(shr_strdata_print) nxg = 1
+(shr_strdata_print) nyg = 1
+(shr_strdata_print) nzg = -1
+(shr_strdata_print) calendar = NO_LEAP
+(shr_strdata_print) io_type = 6
+(shr_strdata_print) eccen = 1.000000E+36
+(shr_strdata_print) mvelpp = 1.000000E+36
+(shr_strdata_print) lambm0 = 1.000000E+36
+(shr_strdata_print) obliqr = 1.000000E+36
+(shr_strdata_print) nstreams = 5
+(shr_strdata_print) pio_iotype = 6
+(shr_strdata_print) streams ( 1) = datm.streams.txt.CLM1PT.1x1_ALP1.Solar 1901 1901 1950
+(shr_strdata_print) taxMode ( 1) = cycle
+(shr_strdata_print) dtlimit ( 1) = 1.500000E+00
+(shr_strdata_print) strnxg ( 1) = 1
+(shr_strdata_print) strnyg ( 1) = 1
+(shr_strdata_print) strnzg ( 1) = -1
+(shr_strdata_print) dofill ( 1) = F
+(shr_strdata_print) fillalgo( 1) = nn
+(shr_strdata_print) fillmask( 1) = nomask
+(shr_strdata_print) fillread( 1) = NOT_SET
+(shr_strdata_print) fillwrit( 1) = NOT_SET
+(shr_strdata_print) domaps ( 1) = F
+(shr_strdata_print) mapalgo ( 1) = nn
+(shr_strdata_print) mapmask ( 1) = nomask
+(shr_strdata_print) mapread ( 1) = NOT_SET
+(shr_strdata_print) mapwrit ( 1) = NOT_SET
+(shr_strdata_print) tintalgo( 1) = coszen
+(shr_strdata_print) readmode( 1) = single
+(shr_strdata_print)
+(shr_strdata_print) streams ( 2) = datm.streams.txt.CLM1PT.1x1_ALP1.Precip 1901 1901 1950
+(shr_strdata_print) taxMode ( 2) = cycle
+(shr_strdata_print) dtlimit ( 2) = 1.500000E+00
+(shr_strdata_print) strnxg ( 2) = 1
+(shr_strdata_print) strnyg ( 2) = 1
+(shr_strdata_print) strnzg ( 2) = -1
+(shr_strdata_print) dofill ( 2) = F
+(shr_strdata_print) fillalgo( 2) = nn
+(shr_strdata_print) fillmask( 2) = nomask
+(shr_strdata_print) fillread( 2) = NOT_SET
+(shr_strdata_print) fillwrit( 2) = NOT_SET
+(shr_strdata_print) domaps ( 2) = F
+(shr_strdata_print) mapalgo ( 2) = nn
+(shr_strdata_print) mapmask ( 2) = nomask
+(shr_strdata_print) mapread ( 2) = NOT_SET
+(shr_strdata_print) mapwrit ( 2) = NOT_SET
+(shr_strdata_print) tintalgo( 2) = nearest
+(shr_strdata_print) readmode( 2) = single
+(shr_strdata_print)
+(shr_strdata_print) streams ( 3) = datm.streams.txt.CLM1PT.1x1_ALP1.TPQW 1901 1901 1950
+(shr_strdata_print) taxMode ( 3) = cycle
+(shr_strdata_print) dtlimit ( 3) = 1.500000E+00
+(shr_strdata_print) strnxg ( 3) = 1
+(shr_strdata_print) strnyg ( 3) = 1
+(shr_strdata_print) strnzg ( 3) = -1
+(shr_strdata_print) dofill ( 3) = F
+(shr_strdata_print) fillalgo( 3) = nn
+(shr_strdata_print) fillmask( 3) = nomask
+(shr_strdata_print) fillread( 3) = NOT_SET
+(shr_strdata_print) fillwrit( 3) = NOT_SET
+(shr_strdata_print) domaps ( 3) = F
+(shr_strdata_print) mapalgo ( 3) = nn
+(shr_strdata_print) mapmask ( 3) = nomask
+(shr_strdata_print) mapread ( 3) = NOT_SET
+(shr_strdata_print) mapwrit ( 3) = NOT_SET
+(shr_strdata_print) tintalgo( 3) = linear
+(shr_strdata_print) readmode( 3) = single
+(shr_strdata_print)
+(shr_strdata_print) streams ( 4) = datm.streams.txt.presaero.clim_2000 1 2000 2000
+(shr_strdata_print) taxMode ( 4) = cycle
+(shr_strdata_print) dtlimit ( 4) = 1.500000E+00
+(shr_strdata_print) strnxg ( 4) = 1
+(shr_strdata_print) strnyg ( 4) = 1
+(shr_strdata_print) strnzg ( 4) = -1
+(shr_strdata_print) dofill ( 4) = F
+(shr_strdata_print) fillalgo( 4) = nn
+(shr_strdata_print) fillmask( 4) = nomask
+(shr_strdata_print) fillread( 4) = NOT_SET
+(shr_strdata_print) fillwrit( 4) = NOT_SET
+(shr_strdata_print) domaps ( 4) = F
+(shr_strdata_print) mapalgo ( 4) = nn
+(shr_strdata_print) mapmask ( 4) = nomask
+(shr_strdata_print) mapread ( 4) = NOT_SET
+(shr_strdata_print) mapwrit ( 4) = NOT_SET
+(shr_strdata_print) tintalgo( 4) = linear
+(shr_strdata_print) readmode( 4) = single
+(shr_strdata_print)
+(shr_strdata_print) streams ( 5) = datm.streams.txt.topo.observed 1 1 1
+(shr_strdata_print) taxMode ( 5) = cycle
+(shr_strdata_print) dtlimit ( 5) = 1.500000E+00
+(shr_strdata_print) strnxg ( 5) = 1
+(shr_strdata_print) strnyg ( 5) = 1
+(shr_strdata_print) strnzg ( 5) = -1
+(shr_strdata_print) dofill ( 5) = F
+(shr_strdata_print) fillalgo( 5) = nn
+(shr_strdata_print) fillmask( 5) = nomask
+(shr_strdata_print) fillread( 5) = NOT_SET
+(shr_strdata_print) fillwrit( 5) = NOT_SET
+(shr_strdata_print) domaps ( 5) = F
+(shr_strdata_print) mapalgo ( 5) = nn
+(shr_strdata_print) mapmask ( 5) = nomask
+(shr_strdata_print) mapread ( 5) = NOT_SET
+(shr_strdata_print) mapwrit ( 5) = NOT_SET
+(shr_strdata_print) tintalgo( 5) = lower
+(shr_strdata_print) readmode( 5) = single
+(shr_strdata_print)
+(shr_strdata_print) nvectors = 0
+(shr_strdata_print) ----------------------------------------------------------
+(datm_comp_init) initialize gsmaps
+(datm_comp_init) copy domains
+(datm_comp_init) allocate AVs
+(datm_comp_init) flds_strm = strm_swdn:strm_precn:strm_tbot:strm_wind:strm_pbot:strm_shum:strm_lwdn
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc 1
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc 2
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc 248
+(shr_dmodel_readstrm) close : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc 1
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc 248
+(shr_dmodel_readstrm) close : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc 1
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc 1824
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc 1813
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc 1
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc 1
+ (datm_comp_run) max values = 266.23443603515625 0.0000000000000000 0.0000000000000000
+(datm_comp_run) atm: model date 20000101 0s
+(datm_comp_init) datm_comp_init done
+(datm_comp_run) writing test.datm.rs1.2000-01-01-01800.bin20000101 1800s
+(shr_stream_restWrite) case name : test
+(shr_stream_restWrite) case description : SDATM strdata
+(shr_stream_restWrite) File created : 2020-10-20 14:24:33
+(shr_stream_restWrite) Number of streams 5
+(shr_stream_restWrite) * stream 1 first file name = clm1pt_ALP1_1901-01.nc
+(shr_stream_restWrite) * stream 1 first have data = T
+(shr_stream_restWrite) * stream 1 first nt = 248
+(shr_stream_restWrite) * stream 1 first date secs = 19010101 0
+(shr_stream_restWrite) * stream 1 last date secs = 19010131 75600
+(shr_stream_restWrite) * stream 2 first file name = clm1pt_ALP1_1901-01.nc
+(shr_stream_restWrite) * stream 2 first have data = T
+(shr_stream_restWrite) * stream 2 first nt = 248
+(shr_stream_restWrite) * stream 2 first date secs = 19010101 5400
+(shr_stream_restWrite) * stream 2 last date secs = 19010131 81000
+(shr_stream_restWrite) * stream 3 first file name = clm1pt_ALP1_1901-01.nc
+(shr_stream_restWrite) * stream 3 first have data = T
+(shr_stream_restWrite) * stream 3 first nt = 248
+(shr_stream_restWrite) * stream 3 first date secs = 19010101 5400
+(shr_stream_restWrite) * stream 3 last date secs = 19010131 81000
+(shr_stream_restWrite) * stream 4 first file name = ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
+(shr_stream_restWrite) * stream 4 first have data = T
+(shr_stream_restWrite) * stream 4 first nt = 2004
+(shr_stream_restWrite) * stream 4 first date secs = 18490116 43200
+(shr_stream_restWrite) * stream 4 last date secs = 20151216 43200
+(shr_stream_restWrite) * stream 5 first file name = ALP1/topodata_ALP1.nc
+(shr_stream_restWrite) * stream 5 first have data = T
+(shr_stream_restWrite) * stream 5 first nt = 1
+(shr_stream_restWrite) * stream 5 first date secs = 10101 0
+(shr_stream_restWrite) * stream 5 last date secs = 10101 0
+(datm_comp_run) atm: model date 20000101 1800s
+(datm_comp_final) -------------------------------------------------------------------------
+(datm_comp_final) atm: end of main integration loop
+(datm_comp_final) -------------------------------------------------------------------------
diff -r 000000000000 -r 8c7414c07367 test-data/cesm.log
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cesm.log Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,233 @@
+nohup: ignoring input
+ PIO rearranger options:
+ comm type =p2p
+ comm fcd =2denable
+ max pend req (comp2io) = 0
+ enable_hs (comp2io) = T
+ enable_isend (comp2io) = F
+ max pend req (io2comp) = 0
+ enable_hs (io2comp) = F
+ enable_isend (io2comp) = T
+(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 1) ( nthreads = 1)
+(seq_comm_setcomm) init ID ( 37 IAC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
+(seq_comm_joincomm) init ID ( 38 CPLIAC ) join IDs = 2 37 ( npes = 1) ( nthreads = 1)
+(seq_comm_jcommarr) init ID ( 35 ALLIACID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
+(seq_comm_joincomm) init ID ( 36 CPLALLIACID ) join IDs = 2 35 ( npes = 1) ( nthreads = 1)
+(seq_comm_printcomms) 1 0 1 1 GLOBAL:
+(seq_comm_printcomms) 2 0 1 1 CPL:
+(seq_comm_printcomms) 3 0 1 1 ALLATMID:
+(seq_comm_printcomms) 4 0 1 1 CPLALLATMID:
+(seq_comm_printcomms) 5 0 1 1 ATM:
+(seq_comm_printcomms) 6 0 1 1 CPLATM:
+(seq_comm_printcomms) 7 0 1 1 ALLLNDID:
+(seq_comm_printcomms) 8 0 1 1 CPLALLLNDID:
+(seq_comm_printcomms) 9 0 1 1 LND:
+(seq_comm_printcomms) 10 0 1 1 CPLLND:
+(seq_comm_printcomms) 11 0 1 1 ALLICEID:
+(seq_comm_printcomms) 12 0 1 1 CPLALLICEID:
+(seq_comm_printcomms) 13 0 1 1 ICE:
+(seq_comm_printcomms) 14 0 1 1 CPLICE:
+(seq_comm_printcomms) 15 0 1 1 ALLOCNID:
+(seq_comm_printcomms) 16 0 1 1 CPLALLOCNID:
+(seq_comm_printcomms) 17 0 1 1 OCN:
+(seq_comm_printcomms) 18 0 1 1 CPLOCN:
+(seq_comm_printcomms) 19 0 1 1 ALLROFID:
+(seq_comm_printcomms) 20 0 1 1 CPLALLROFID:
+(seq_comm_printcomms) 21 0 1 1 ROF:
+(seq_comm_printcomms) 22 0 1 1 CPLROF:
+(seq_comm_printcomms) 23 0 1 1 ALLGLCID:
+(seq_comm_printcomms) 24 0 1 1 CPLALLGLCID:
+(seq_comm_printcomms) 25 0 1 1 GLC:
+(seq_comm_printcomms) 26 0 1 1 CPLGLC:
+(seq_comm_printcomms) 27 0 1 1 ALLWAVID:
+(seq_comm_printcomms) 28 0 1 1 CPLALLWAVID:
+(seq_comm_printcomms) 29 0 1 1 WAV:
+(seq_comm_printcomms) 30 0 1 1 CPLWAV:
+(seq_comm_printcomms) 31 0 1 1 ALLESPID:
+(seq_comm_printcomms) 32 0 1 1 CPLALLESPID:
+(seq_comm_printcomms) 33 0 1 1 ESP:
+(seq_comm_printcomms) 34 0 1 1 CPLESP:
+(seq_comm_printcomms) 35 0 1 1 ALLIACID:
+(seq_comm_printcomms) 36 0 1 1 CPLALLIACID:
+(seq_comm_printcomms) 37 0 1 1 IAC:
+(seq_comm_printcomms) 38 0 1 1 CPLIAC:
+ (t_initf) Read in prof_inparm namelist from: drv_in
+ (t_initf) Using profile_disable= F
+ (t_initf) profile_timer= 4
+ (t_initf) profile_depth_limit= 4
+ (t_initf) profile_detail_limit= 2
+ (t_initf) profile_barrier= F
+ (t_initf) profile_outpe_num= 1
+ (t_initf) profile_outpe_stride= 0
+ (t_initf) profile_single_file= F
+ (t_initf) profile_global_stats= T
+ (t_initf) profile_ovhd_measurement= F
+ (t_initf) profile_add_detail= F
+ (t_initf) profile_papi_enable= F
+
+
+ 1 pes participating in computation for CLM
+
+-----------------------------------
+
+NODE# NAME
+( 0) galaxy-tools.novalocal
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Variable not found
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs
+ clmfates_interfaceMod.F90:: reading fates_mort_freezetol
+ clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min
+ clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac
+ clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler
+ clmfates_interfaceMod.F90:: reading fates_fire_crown_kill
+ clmfates_interfaceMod.F90:: reading fates_recruit_initd
+ clmfates_interfaceMod.F90:: reading fates_seed_suppl
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept
+ clmfates_interfaceMod.F90:: reading fates_lf_flab
+ clmfates_interfaceMod.F90:: reading fates_lf_fcel
+ clmfates_interfaceMod.F90:: reading fates_lf_flig
+ clmfates_interfaceMod.F90:: reading fates_fr_flab
+ clmfates_interfaceMod.F90:: reading fates_fr_fcel
+ clmfates_interfaceMod.F90:: reading fates_fr_flig
+ clmfates_interfaceMod.F90:: reading fates_leaf_xl
+ clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index
+ clmfates_interfaceMod.F90:: reading fates_leaf_c3psn
+ clmfates_interfaceMod.F90:: reading fates_smpso
+ clmfates_interfaceMod.F90:: reading fates_smpsc
+ clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature
+ clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept
+ clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy
+ clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory
+ clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy
+ clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory
+ clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment
+ clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH
+ clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro
+ clmfates_interfaceMod.F90:: reading fates_hydr_p_taper
+ clmfates_interfaceMod.F90:: reading fates_hydr_rs2
+ clmfates_interfaceMod.F90:: reading fates_hydr_srl
+ clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem
+ clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs
+ clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs
+ clmfates_interfaceMod.F90:: reading fates_mort_bmort
+ clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation
+ clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure
+ clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold
+ clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuha
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse
+ clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse
+ clmfates_interfaceMod.F90:: reading fates_leaf_tpuse
+ clmfates_interfaceMod.F90:: reading fates_seed_germination_rate
+ clmfates_interfaceMod.F90:: reading fates_seed_decay_rate
+ clmfates_interfaceMod.F90:: reading fates_trim_limit
+ clmfates_interfaceMod.F90:: reading fates_trim_inc
+ clmfates_interfaceMod.F90:: reading fates_leaf_diameter
+ clmfates_interfaceMod.F90:: reading fates_z0mr
+ clmfates_interfaceMod.F90:: reading fates_displar
+ clmfates_interfaceMod.F90:: reading fates_phenflush_fraction
+ clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold
+ clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction
+ clmfates_interfaceMod.F90:: reading fates_eca_decompmicc
+ clmfates_interfaceMod.F90:: reading fates_eca_km_nh4
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4
+ clmfates_interfaceMod.F90:: reading fates_eca_km_no3
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3
+ clmfates_interfaceMod.F90:: reading fates_eca_km_p
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_p
+ clmfates_interfaceMod.F90:: reading fates_eca_km_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase
+ clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase
+ clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake
+ clmfates_interfaceMod.F90:: reading fates_prescribed_puptake
+ clmfates_interfaceMod.F90:: reading fates_rholvis
+ clmfates_interfaceMod.F90:: reading fates_rholnir
+ clmfates_interfaceMod.F90:: reading fates_rhosvis
+ clmfates_interfaceMod.F90:: reading fates_rhosnir
+ clmfates_interfaceMod.F90:: reading fates_taulvis
+ clmfates_interfaceMod.F90:: reading fates_taulnir
+ clmfates_interfaceMod.F90:: reading fates_tausvis
+ clmfates_interfaceMod.F90:: reading fates_tausnir
+ clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_p50_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_resid_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node
+ clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node
+ clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top
+ NetCDF: Variable not found
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Invalid dimension ID or name
+ NetCDF: Variable not found
+ NetCDF: Variable not found
diff -r 000000000000 -r 8c7414c07367 test-data/cpl.log
Binary file test-data/cpl.log has changed
diff -r 000000000000 -r 8c7414c07367 test-data/history_file.netcdf
diff -r 000000000000 -r 8c7414c07367 test-data/inputdata_test.tar
Binary file test-data/inputdata_test.tar has changed
diff -r 000000000000 -r 8c7414c07367 test-data/lnd.log
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lnd.log Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,2106 @@
+(lnd_init_mct) :CLM land model initialization
+ unknown
+
+ Attempting to initialize the land model .....
+
+ Attempting to initialize run control settings .....
+ Read in clm_inparm namelist from: lnd_in
+
+ rooting_profile settings:
+ rooting_profile_method_water = 1
+ (rooting_profile_varindex_water = 1 )
+ rooting_profile_method_carbon = 1
+ (rooting_profile_varindex_carbon = 2 )
+
+ soilwater_movement settings:
+ soilwater_movement_method = 1
+ upper_boundary_condition = 1
+ lower_boundary_condition = 2
+ use_bedrock = F
+ dtmin = 60.000000000000000
+ verySmall = 1.0000000000000000E-008
+ xTolerUpper = 0.10000000000000001
+ xTolerLower = 1.0000000000000000E-002
+ expensive = 42
+ inexpensive = 1
+ flux_calculation = 1
+
+ soil_resis settings:
+ soil_resis_method = 1
+ Read in canopyfluxes_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ canopyfluxes_inparm settings:
+&CANOPYFLUXES_INPARM
+ USE_UNDERCANOPY_STABILITY=F,
+ ITMAX_CANOPY_FLUXES= 40,
+ /
+
+ Read in clm_CanopyHydrology_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ canopyhydrology settings:
+ interception_fraction = 1.0000000000000000
+ maximum_leaf_wetted_fraction = 5.0000000000000003E-002
+ use_clm5_fpi = T
+ Read in surfacealbedo_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ surfacealbedo_inparm settings
+&SURFACEALBEDO_INPARM
+ SNOWVEG_AFFECTS_RADIATION=T,
+ /
+
+ Read in clm_SnowHydrology_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ SnowHydrology settings:
+&CLM_SNOWHYDROLOGY_INPARM
+ WIND_DEPENDENT_SNOW_DENSITY=T,
+ SNOW_OVERBURDEN_COMPACTION_METHOD="Vionnet2012 ",
+ LOTMP_SNOWDENSITY_METHOD="Slater2017 ",
+ UPPLIM_DESTRUCT_METAMORPH= 175.00000000000000 ,
+ OVERBURDEN_COMPRESS_TFACTOR= 8.0000000000000002E-002,
+ MIN_WIND_SNOWCOMPACT= 5.0000000000000000 ,
+ RESET_SNOW=F,
+ RESET_SNOW_GLC=F,
+ RESET_SNOW_GLC_ELA= 1000000000.0000000 ,
+ SNOW_DZMIN_1= 1.0000000000000000E-002,
+ SNOW_DZMAX_L_1= 2.9999999999999999E-002,
+ SNOW_DZMAX_U_1= 2.0000000000000000E-002,
+ SNOW_DZMIN_2= 1.4999999999999999E-002,
+ SNOW_DZMAX_L_2= 7.0000000000000007E-002,
+ SNOW_DZMAX_U_2= 5.0000000000000003E-002,
+ /
+
+ Read in clmu_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ urban air conditioning/heating and wasteheat = ON_WASTEHEAT
+ urban traffic flux = F
+ Read in clm_humanindex_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ Read in luna namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ luna settings:
+&LUNA
+ JMAXB1= 0.10000000000000001 ,
+ /
+
+ Read in soilhydrology_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ soilhydrology_inparm settings:
+&SOILHYDROLOGY_INPARM
+ BASEFLOW_SCALAR= 1.0000000000000000E-003,
+ /
+
+ Read in CENTURY_soilBGCDecompCascade namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ CENTURY_soilBGCDecompCascade settings:
+&CENTURY_SOILBGCDECOMPCASCADE
+ INITIAL_CSTOCKS= 3*200.00000000000000 ,
+ INITIAL_CSTOCKS_DEPTH= 1.5000000000000000 ,
+ /
+
+ Successfully initialized run control settings
+
+ Attempting to read maxsoil_patches and numcft from the surface data .....
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 393216
+ Successfully read maxsoil_patches and numcft from the surface data
+
+ soil_layerstruct_predefined varpar 20SL_8.5m
+ soil_layerstruct_userdefined varpar -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000
+ nlevsoi, nlevgrnd varpar 20 25
+ CLM varpar subsurface discretization levels
+ nlevsoi = 20
+ nlevgrnd = 25
+ nlevdecomp = 20
+ nlevdecomp_full = 25
+ nlevlak = 10
+
+ define run:
+ source = Community Terrestrial Systems Model
+ model_version = unknown
+ run type = initial
+ case title = UNSET
+ username = jovyan
+ hostname = espresso
+ process control parameters:
+ use_lch4 = F
+ use_nitrif_denitrif = F
+ use_vertsoilc = T
+ use_extralakelayers = F
+ use_vichydro = F
+ use_century_decomp = T
+ use_cn = F
+ use_cndv = F
+ use_crop = F
+ use_fertilizer = F
+ use_grainproduct = F
+ use_ozone = F
+ use_snicar_frc = F
+ use_vancouver = F
+ use_mexicocity = F
+ use_noio = F
+ use_SSRE = F
+ input data files:
+ PFT physiology and parameters file = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ surface data = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ land frac data = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ Number of ACTIVE PFTS (0 means input pft data NOT collapsed to n_dom_pfts) = 0
+ Number of ACTIVE LANDUNITS (0 means input landunit data NOT collapsed to n_dom_landunits) = 0
+ Collapse urban landunits; done before collapsing all landunits to n_dom_landunits; .false. means do nothing i.e. keep all the urban landunits, though n_dom_landunits may still remove them = F
+ Threshold above which the model keeps the soil landunit = 0.0000000000000000
+ Threshold above which the model keeps the crop landunit = 0.0000000000000000
+ Threshold above which the model keeps the glacier landunit = 0.0000000000000000
+ Threshold above which the model keeps the lake landunit = 0.0000000000000000
+ Threshold above which the model keeps the wetland landunit = 0.0000000000000000
+ Threshold above which the model keeps the urban landunits = 0.0000000000000000
+ snow optical properties file = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc
+ snow aging parameters file = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc
+ Number of snow layers = 12
+ Max snow depth (mm) = 10000.000000000000
+ glc number of elevation classes = 10
+ glc CLM glacier areas and topography will NOT evolve dynamically
+ glc snow persistence max days = 0
+ initial data created by model (cold start)
+ atmospheric forcing data is from cesm atm model
+ Restart parameters:
+ restart pointer file directory = .
+ restart pointer file name = rpointer.lnd
+ model physics parameters:
+ CO2 volume mixing ratio (umol/mol) = 367.00000000000000
+ land-ice albedos (unitless 0-1) = 0.50000000000000000 0.29999999999999999
+ pre-defined soil layer structure = 20SL_8.5m
+ user-defined soil layer structure = -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000 -9999999.0000000000
+ user-defined number of soil layers = -9999999
+ plant hydraulic stress = F
+ dynamic roots = F
+ nsegspc = 35
+ perchroot (plant water stress based on unfrozen layers only) = F
+ perchroot (plant water stress based on time-integrated active layer only) = F
+
+ Lake Model Namelists:
+ Increased mixing relative to Hostetler wind-driven eddy expression will be used for deep lakes exceeding depth 25.000000000000000 by a factor of 10.000000000000000 .
+ Albedo over melting lakes will approach values (visible, NIR): 0.10000000000000001 0.10000000000000001 as compared with 0.60, 0.40 for cold frozen lakes with no snow.
+ plant nitrogen model namelists:
+ use_flexibleCN = F
+ use_luna = F
+ ED/FATES:
+ use_fates = T
+ fates_spitfire_mode = 0
+ use_fates_logging = F
+ fates_paramfile = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/fates_params_api.14.0.0_12pft_c200921.nc
+ fates_parteh_mode = 1
+ use_fates_planthydro = F
+ use_fates_cohort_age_tracking = F
+ use_fates_ed_st3 = F
+ use_fates_ed_prescribed_phys = F
+ use_fates_inventory_init = F
+ use_fates_fixed_biogeog = F
+ fates_inventory_ctrl_filename =
+
+ dynamic_subgrid settings:
+&DYNAMIC_SUBGRID
+ FLANDUSE_TIMESERIES=" ",
+ DO_TRANSIENT_PFTS=F,
+ DO_TRANSIENT_CROPS=F,
+ DO_HARVEST=F,
+ RESET_DYNBAL_BASELINES=F,
+ FOR_TESTING_ALLOW_NON_ANNUAL_CHANGES=F,
+ FOR_TESTING_ZERO_DYNBAL_FLUXES=F,
+ /
+
+ Attempting to read global land mask from /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ (GETFIL): attempting to find local file domain.lnd.ALP1.200422.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc 458752
+ lat/lon grid flag (isgrid2d) is F
+ ncd_inqvid: variable LANDMASK is not on dataset
+ decomp precompute numg,nclumps,seglen1,avg_seglen,nsegspc= 1 1 T 1.00000000 1.00000000
+ Surface Grid Characteristics
+ longitude points = 1
+ latitude points = 1
+ total number of land gridcells = 1
+ Decomposition Characteristics
+ clumps per process = 1
+ gsMap Characteristics
+ lnd gsmap glo num of segs = 1
+
+ Attempting to read ldomain from /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ (GETFIL): attempting to find local file domain.lnd.ALP1.200422.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc 458752
+ domain_check set = domain_set
+ domain_check decomped = F
+ domain_check ns = 1
+ domain_check ni,nj = 1 1
+ domain_check nbeg,nend = 1 1
+ domain_check lonc = 8.1234299999999990 8.1234299999999990
+ domain_check latc = 61.024299999999997 61.024299999999997
+ domain_check mask = 1 1
+ domain_check frac = 1.0000000000000000 1.0000000000000000
+ domain_check area = 0.59903950391113359 0.59903950391113359
+ domain_check pftm = -9999 -9999
+
+ Attempting to read GLACIER_REGION...
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 458752
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ clm_glacier_behavior settings:
+&CLM_GLACIER_BEHAVIOR
+ GLACIER_REGION_BEHAVIOR="single_at_atm_topo ", 2*"virtual ","multiple ", 7*"UNSET ",
+ GLACIER_REGION_MELT_BEHAVIOR="remains_in_place ", 3*"replaced_by_ice ", 7*"UNSET ",
+ GLACIER_REGION_ICE_RUNOFF_BEHAVIOR= 2*"melted ", 2*"remains_ice ", 7*"UNSET ",
+ /
+
+ Reading in urban input data from fsurdat file ...
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 458752
+ UrbanInput /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Sucessfully read urban input data
+
+ Attempting to read PFT physiological data .....
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 458752
+ (GETFIL): attempting to find local file fates_params_api.14.0.0_12pft_c200921.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/fates_params_api.14.0.0_12pft_c200921.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/fates_params_api.14.0.0_12pft_c200921.nc 458752
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 458752
+ Successfully read PFT physiological data
+
+ Attempting to read surface boundary data .....
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 458752
+ check_var: variable xc is not on dataset
+ surfrd_get_data lon_var = LONGXY lat_var =LATIXY
+ WARNING: New CFT-based format surface datasets should be run with create_crop_landunit=T
+ WARNING: When fates is on we allow new CFT based surface datasets to be used with create_crop_land FALSE
+ Successfully read surface boundary data
+
+ clmfates_interfaceMod.F90::FatesReadParameters :: CLM reading ED/FATES parameters
+ (GETFIL): attempting to find local file fates_params_api.14.0.0_12pft_c200921.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/fates_params_api.14.0.0_12pft_c200921.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/fates_params_api.14.0.0_12pft_c200921.nc 458752
+ clmfates_interfaceMod.F90:: reading fates_mort_disturb_frac
+ clmfates_interfaceMod.F90:: reading fates_comp_excln
+ clmfates_interfaceMod.F90:: reading fates_init_litter
+ clmfates_interfaceMod.F90:: reading fates_fire_nignitions
+ clmfates_interfaceMod.F90:: reading fates_mort_understorey_death
+ clmfates_interfaceMod.F90:: reading fates_cwd_fcel
+ clmfates_interfaceMod.F90:: reading fates_cwd_flig
+ clmfates_interfaceMod.F90:: reading fates_base_mr_20
+ clmfates_interfaceMod.F90:: reading fates_phen_drought_threshold
+ clmfates_interfaceMod.F90:: reading fates_phen_doff_time
+ clmfates_interfaceMod.F90:: reading fates_phen_a
+ clmfates_interfaceMod.F90:: reading fates_phen_b
+ clmfates_interfaceMod.F90:: reading fates_phen_c
+ clmfates_interfaceMod.F90:: reading fates_phen_chiltemp
+ clmfates_interfaceMod.F90:: reading fates_phen_mindayson
+ clmfates_interfaceMod.F90:: reading fates_phen_ncolddayslim
+ clmfates_interfaceMod.F90:: reading fates_phen_coldtemp
+ clmfates_interfaceMod.F90:: reading fates_cohort_size_fusion_tol
+ clmfates_interfaceMod.F90:: reading fates_cohort_age_fusion_tol
+ clmfates_interfaceMod.F90:: reading fates_patch_fusion_tol
+ clmfates_interfaceMod.F90:: reading fates_canopy_closure_thresh
+ clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_model
+ clmfates_interfaceMod.F90:: reading fates_hydr_kmax_rsurf1
+ clmfates_interfaceMod.F90:: reading fates_hydr_kmax_rsurf2
+ clmfates_interfaceMod.F90:: reading fates_hydr_psi0
+ clmfates_interfaceMod.F90:: reading fates_hydr_psicap
+ clmfates_interfaceMod.F90:: reading fates_soil_salinity
+ clmfates_interfaceMod.F90:: reading fates_logging_dbhmin
+ clmfates_interfaceMod.F90:: reading fates_logging_dbhmax
+ clmfates_interfaceMod.F90:: reading fates_logging_collateral_frac
+ clmfates_interfaceMod.F90:: reading fates_logging_coll_under_frac
+ clmfates_interfaceMod.F90:: reading fates_logging_direct_frac
+ clmfates_interfaceMod.F90:: reading fates_logging_mechanical_frac
+ clmfates_interfaceMod.F90:: reading fates_logging_event_code
+ clmfates_interfaceMod.F90:: reading fates_logging_dbhmax_infra
+ clmfates_interfaceMod.F90:: reading fates_logging_export_frac
+ clmfates_interfaceMod.F90:: reading fates_eca_plant_escalar
+ clmfates_interfaceMod.F90:: reading fates_q10_mr
+ clmfates_interfaceMod.F90:: reading fates_q10_froz
+ clmfates_interfaceMod.F90:: reading fates_history_sizeclass_bin_edges
+ clmfates_interfaceMod.F90:: reading fates_history_ageclass_bin_edges
+ clmfates_interfaceMod.F90:: reading fates_history_height_bin_edges
+ clmfates_interfaceMod.F90:: reading fates_fire_active_crown_fire
+ clmfates_interfaceMod.F90:: reading fates_fire_cg_strikes
+ clmfates_interfaceMod.F90:: reading fates_history_coageclass_bin_edges
+ clmfates_interfaceMod.F90:: reading fates_fire_fdi_a
+ clmfates_interfaceMod.F90:: reading fates_fire_fdi_b
+ clmfates_interfaceMod.F90:: reading fates_fire_fdi_alpha
+ clmfates_interfaceMod.F90:: reading fates_fire_miner_total
+ clmfates_interfaceMod.F90:: reading fates_fire_fuel_energy
+ clmfates_interfaceMod.F90:: reading fates_fire_part_dens
+ clmfates_interfaceMod.F90:: reading fates_fire_miner_damp
+ clmfates_interfaceMod.F90:: reading fates_fire_max_durat
+ clmfates_interfaceMod.F90:: reading fates_fire_durat_slope
+ clmfates_interfaceMod.F90:: reading fates_fire_drying_ratio
+ clmfates_interfaceMod.F90:: reading fates_fire_threshold
+ clmfates_interfaceMod.F90:: reading fates_CWD_frac
+ clmfates_interfaceMod.F90:: reading fates_fire_SAV
+ clmfates_interfaceMod.F90:: reading fates_fire_FBD
+ clmfates_interfaceMod.F90:: reading fates_fire_min_moisture
+ clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture
+ clmfates_interfaceMod.F90:: reading fates_fire_low_moisture_Coeff
+ clmfates_interfaceMod.F90:: reading fates_fire_low_moisture_Slope
+ clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture_Coeff
+ clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture_Slope
+ clmfates_interfaceMod.F90:: reading fates_max_decomp
+ clmfates_interfaceMod.F90:: reading fates_phen_stress_decid
+ clmfates_interfaceMod.F90:: reading fates_phen_season_decid
+ clmfates_interfaceMod.F90:: reading fates_phen_evergreen
+ clmfates_interfaceMod.F90:: reading fates_fnrt_prof_a
+ clmfates_interfaceMod.F90:: reading fates_fnrt_prof_b
+ clmfates_interfaceMod.F90:: reading fates_fnrt_prof_mode
+ clmfates_interfaceMod.F90:: reading fates_woody
+ clmfates_interfaceMod.F90:: reading fates_wood_density
+ clmfates_interfaceMod.F90:: reading fates_leaf_slamax
+ clmfates_interfaceMod.F90:: reading fates_leaf_slatop
+ clmfates_interfaceMod.F90:: reading fates_allom_sai_scaler
+ clmfates_interfaceMod.F90:: reading fates_seed_dbh_repro_threshold
+ clmfates_interfaceMod.F90:: reading fates_alloc_storage_cushion
+ clmfates_interfaceMod.F90:: reading fates_leaf_stor_priority
+ clmfates_interfaceMod.F90:: reading fates_senleaf_long_fdrought
+ clmfates_interfaceMod.F90:: reading fates_root_long
+ clmfates_interfaceMod.F90:: reading fates_seed_alloc_mature
+ clmfates_interfaceMod.F90:: reading fates_seed_alloc
+ clmfates_interfaceMod.F90:: reading fates_c2b
+ clmfates_interfaceMod.F90:: reading fates_allom_l2fr
+ clmfates_interfaceMod.F90:: reading fates_grperc
+ clmfates_interfaceMod.F90:: reading fates_allom_dbh_maxheight
+ clmfates_interfaceMod.F90:: reading fates_allom_hmode
+ clmfates_interfaceMod.F90:: reading fates_allom_lmode
+ clmfates_interfaceMod.F90:: reading fates_allom_fmode
+ clmfates_interfaceMod.F90:: reading fates_allom_amode
+ clmfates_interfaceMod.F90:: reading fates_allom_stmode
+ clmfates_interfaceMod.F90:: reading fates_allom_cmode
+ clmfates_interfaceMod.F90:: reading fates_allom_smode
+ clmfates_interfaceMod.F90:: reading fates_allom_la_per_sa_int
+ clmfates_interfaceMod.F90:: reading fates_allom_la_per_sa_slp
+ clmfates_interfaceMod.F90:: reading fates_allom_agb_frac
+ clmfates_interfaceMod.F90:: reading fates_allom_d2h1
+ clmfates_interfaceMod.F90:: reading fates_allom_d2h2
+ clmfates_interfaceMod.F90:: reading fates_allom_d2h3
+ clmfates_interfaceMod.F90:: reading fates_allom_d2bl1
+ clmfates_interfaceMod.F90:: reading fates_allom_d2bl2
+ clmfates_interfaceMod.F90:: reading fates_allom_d2bl3
+ clmfates_interfaceMod.F90:: reading fates_allom_blca_expnt_diff
+ clmfates_interfaceMod.F90:: reading fates_allom_d2ca_coefficient_max
+ clmfates_interfaceMod.F90:: reading fates_allom_d2ca_coefficient_min
+ clmfates_interfaceMod.F90:: reading fates_allom_agb1
+ clmfates_interfaceMod.F90:: reading fates_allom_agb2
+ clmfates_interfaceMod.F90:: reading fates_allom_agb3
+ clmfates_interfaceMod.F90:: reading fates_allom_agb4
+ clmfates_interfaceMod.F90:: reading fates_turnover_retrans_mode
+ clmfates_interfaceMod.F90:: reading fates_branch_turnover
+ clmfates_interfaceMod.F90:: reading fates_prt_nitr_stoich_p1
+ clmfates_interfaceMod.F90:: reading fates_prt_nitr_stoich_p2
+ clmfates_interfaceMod.F90:: reading fates_prt_phos_stoich_p1
+ clmfates_interfaceMod.F90:: reading fates_prt_phos_stoich_p2
+ clmfates_interfaceMod.F90:: reading fates_prt_alloc_priority
+ clmfates_interfaceMod.F90:: reading fates_turnover_carb_retrans
+ clmfates_interfaceMod.F90:: reading fates_turnover_nitr_retrans
+ clmfates_interfaceMod.F90:: reading fates_turnover_phos_retrans
+ clmfates_interfaceMod.F90:: reading fates_leaf_long
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 458752
+
+ ---clm_ptrs_check:
+ clm_ptrs_check: g index ranges - OK
+ clm_ptrs_check: l index ranges - OK
+ clm_ptrs_check: c index ranges - OK
+ clm_ptrs_check: p index ranges - OK
+ clm_ptrs_check: l mono increasing - OK
+ clm_ptrs_check: c mono increasing - OK
+ clm_ptrs_check: p mono increasing - OK
+ clm_ptrs_check: tree consistent - OK
+
+ Surface Grid Characteristics
+ longitude points = 1
+ latitude points = 1
+ total number of gridcells = 1
+ total number of landunits = 2
+ total number of columns = 2
+ total number of patches = 18
+ total number of cohorts = 1680
+ Decomposition Characteristics
+ clumps per process = 1
+ gsMap Characteristics
+ lnd gsmap glo num of segs = 1
+ gce gsmap glo num of segs = 1
+ lun gsmap glo num of segs = 1
+ col gsmap glo num of segs = 1
+ patch gsmap glo num of segs = 1
+ coh gsmap glo num of segs = 1
+
+
+ proc= 0 beg gridcell= 1 end gridcell= 1 total gridcells per proc= 1
+ proc= 0 beg landunit= 1 end landunit= 2 total landunits per proc= 2
+ proc= 0 beg column = 1 end column = 2 total columns per proc = 2
+ proc= 0 beg patch = 1 end patch = 18 total patches per proc = 18
+ proc= 0 beg coh = 1 end coh = 1680 total coh per proc = 1680
+ proc= 0 lnd ngseg = 1 lnd nlseg = 1
+ proc= 0 gce ngseg = 1 gce nlseg = 1
+ proc= 0 lun ngseg = 1 lun nlseg = 1
+ proc= 0 col ngseg = 1 col nlseg = 1
+ proc= 0 patch ngseg = 1 patch nlseg = 1
+ proc= 0 coh ngseg = 1 coh nlseg = 1
+ proc= 0 nclumps = 1
+ proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 1 total gridcells per clump= 1
+ proc= 0 clump no = 1 clump id= 1 beg landunit= 1 end landunit= 2 total landunits per clump = 2
+ proc= 0 clump no = 1 clump id= 1 beg column = 1 end column = 2 total columns per clump = 2
+ proc= 0 clump no = 1 clump id= 1 beg patch = 1 end patch = 18 total patches per clump = 18
+ proc= 0 clump no = 1 clump id= 1 beg cohort = 1 end cohort = 1680 total cohorts per clump = 1680
+ Read in clm_canopy_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ Read in photosyns_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ photosyns_inparm settings:
+&PHOTOSYNS_INPARM
+ LEAFRESP_METHOD= 0,
+ LIGHT_INHIBIT=T,
+ ROOTSTEM_ACC=F,
+ STOMATALCOND_METHOD="Ball-Berry1987 ",
+ MODIFYPHOTO_AND_LMR_FORCROP=T,
+ /
+
+ Read in crop namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ baset mapping for ALL crops are constant
+
+ crop settings:
+&CROP
+ BASET_MAPPING="constant ",
+ BASET_LATVARY_INTERCEPT= 12.000000000000000 ,
+ BASET_LATVARY_SLOPE= 0.40000000000000002 ,
+ /
+
+ paramMod.F90::readParameters :: reading CLM parameters
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 458752
+ Attempting to read CN/BGC shared namelist parameters .....
+ Read in bgc_shared namelist from: lnd_in
+ CN/BGC shared namelist parameters:
+
+ decomp_depth_efolding = 10.000000000000000
+ constrain_stress_deciduous_onset = T
+
+ ******** CLM Time Manager Configuration ********
+ Calendar type: NO_LEAP
+ Timestep size (seconds): 1800
+ Start date (yr mon day tod): 2000 1 1 0
+ Stop date (yr mon day tod): 2000 1 1 1800
+ Reference date (yr mon day tod): 2000 1 1 0
+ Current step number: 0
+ Ending step number: -999999999
+ Current date (yr mon day tod): 2000 1 1 0
+ ************************************************
+ Skip balance checking for the first 2 time steps
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 458752
+
+ urbantv_streams settings:
+ stream_year_first_urbantv = 2000
+ stream_year_last_urbantv = 2000
+ model_year_align_urbantv = 1
+ stream_fldFileName_urbantv = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/urbandata/ALP1/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923_ALP1.nc
+ urbantv_tintalgo = linear
+
+ (shr_strdata_init_streams) stream 1
+ (shr_strdata_init_streams) filePath = 1
+ (shr_strdata_init_streams) fileName = 1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/urbandata/ALP1/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923_ALP1.nc
+ (shr_strdata_init_streams) timeName = 1 time
+ (shr_strdata_init_streams) lonName = 1 lon
+ (shr_strdata_init_streams) latName = 1 lat
+ (shr_strdata_init_streams) hgtName = 1 undefined
+ (shr_strdata_init_streams) maskName = 1 LANDMASK
+ (shr_strdata_init_streams) areaName = 1 area
+(shr_strdata_print) ----------------------------------------------------------
+(shr_strdata_print) name = urban time varying data
+(shr_strdata_print) dataMode = NULL
+(shr_strdata_print) domainFile = null
+(shr_strdata_print) nxg = 1
+(shr_strdata_print) nyg = 1
+(shr_strdata_print) nzg = 1
+(shr_strdata_print) calendar = NO_LEAP
+(shr_strdata_print) io_type = 6
+(shr_strdata_print) eccen = 1.000000E+36
+(shr_strdata_print) mvelpp = 1.000000E+36
+(shr_strdata_print) lambm0 = 1.000000E+36
+(shr_strdata_print) obliqr = 1.000000E+36
+(shr_strdata_print) nstreams = 1
+(shr_strdata_print) pio_iotype = 6
+(shr_strdata_print) streams ( 1) = null
+(shr_strdata_print) taxMode ( 1) = extend
+(shr_strdata_print) dtlimit ( 1) = 1.000000E+30
+(shr_strdata_print) strnxg ( 1) = 1
+(shr_strdata_print) strnyg ( 1) = 1
+(shr_strdata_print) strnzg ( 1) = -1
+(shr_strdata_print) dofill ( 1) = F
+(shr_strdata_print) fillalgo( 1) = none
+(shr_strdata_print) fillmask( 1) = nomask
+(shr_strdata_print) fillread( 1) = NOT_SET
+(shr_strdata_print) fillwrit( 1) = NOT_SET
+(shr_strdata_print) domaps ( 1) = F
+(shr_strdata_print) mapalgo ( 1) = nn
+(shr_strdata_print) mapmask ( 1) = dstmask
+(shr_strdata_print) mapread ( 1) = NOT_SET
+(shr_strdata_print) mapwrit ( 1) = NOT_SET
+(shr_strdata_print) tintalgo( 1) = linear
+(shr_strdata_print) readmode( 1) = single
+(shr_strdata_print)
+(shr_strdata_print) nvectors = 0
+(shr_strdata_print) ----------------------------------------------------------
+(shr_dmodel_readstrm) open : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/urbandata/ALP1/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923_ALP1.nc
+(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/urbandata/ALP1/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923_ALP1.nc 152
+(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/urbandata/ALP1/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923_ALP1.nc 152
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 589824
+ zsoi 1.0000000000000000E-002 4.0000000000000001E-002 8.9999999999999997E-002 0.16000000000000000 0.26000000000000001 0.40000000000000002 0.57999999999999996 0.79999999999999993 1.0600000000000001 1.3599999999999999 1.7000000000000002 2.0800000000000001 2.5000000000000000 2.9900000000000002 3.5800000000000001 4.2700000000000005 5.0600000000000005 5.9500000000000002 6.9399999999999995 8.0299999999999994 9.7949999999999999 13.327766952966369 19.483129170124386 28.870724434316031 41.998436864002869
+ zisoi: 0.0000000000000000 2.0000000000000000E-002 5.9999999999999998E-002 0.12000000000000000 0.20000000000000001 0.32000000000000001 0.47999999999999998 0.67999999999999994 0.91999999999999993 1.2000000000000000 1.5200000000000000 1.8800000000000001 2.2800000000000002 2.7200000000000002 3.2600000000000002 3.9000000000000004 4.6400000000000006 5.4800000000000004 6.4199999999999999 7.4600000000000000 8.5999999999999996 10.990000000000000 15.665533905932739 23.300724434316031 34.440724434316031 49.556149293689714
+ dzsoi: 2.0000000000000000E-002 4.0000000000000001E-002 5.9999999999999998E-002 8.0000000000000002E-002 0.12000000000000000 0.16000000000000000 0.20000000000000001 0.23999999999999999 0.28000000000000003 0.32000000000000001 0.36000000000000004 0.40000000000000002 0.44000000000000000 0.54000000000000004 0.64000000000000001 0.73999999999999999 0.84000000000000008 0.93999999999999995 1.0400000000000000 1.1400000000000001 2.3900000000000001 4.6755339059327383 7.6351905283832906 11.140000000000001 15.115424859373686
+ dzsoi_decomp: 2.0000000000000000E-002 4.0000000000000001E-002 5.9999999999999998E-002 8.0000000000000002E-002 0.12000000000000000 0.16000000000000000 0.20000000000000001 0.23999999999999999 0.28000000000000003 0.32000000000000001 0.36000000000000004 0.40000000000000002 0.44000000000000000 0.54000000000000004 0.64000000000000001 0.73999999999999999 0.84000000000000008 0.93999999999999995 1.0400000000000000 1.1400000000000001 2.3900000000000001 4.6755339059327383 7.6351905283832906 11.140000000000001 15.115424859373686
+ not using use_bedrock!!
+ jmin_bedrock: 6
+ dzmin = 1.0000000000000000E-002 1.4999999999999999E-002 2.5000000000000001E-002 5.5000000000000000E-002 0.11500000000000000 0.23500000000000001 0.47500000000000003 0.95500000000000007 1.9150000000000000 3.8350000000000000 7.6749999999999998 15.355000000000000
+ dzmax_l = 2.9999999999999999E-002 7.0000000000000007E-002 0.17999999999999999 0.41000000000000003 0.88000000000000012 1.8300000000000001 3.7400000000000002 7.5700000000000003 15.240000000000000 30.590000000000000 61.299999999999997 1.7976931348623157E+308
+ dzmax_u = 2.0000000000000000E-002 5.0000000000000003E-002 0.11000000000000000 0.23000000000000001 0.47000000000000003 0.95000000000000007 1.9100000000000001 3.8300000000000001 7.6699999999999999 15.350000000000000 30.710000000000001 1.7976931348623157E+308
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ atm2lnd_inparm settings:
+ repartition_rain_snow = T
+ glcmec_downscale_longwave = T
+ lapse_rate = 6.0000000000000001E-003
+ lapse_rate_longwave = 3.2000000000000001E-002
+ longwave_downscaling_limit = 0.50000000000000000
+ precip_repartition_glc_all_snow_t = -2.0000000000000000
+ precip_repartition_glc_all_rain_t = 0.0000000000000000
+ precip_repartition_nonglc_all_snow_t = 0.0000000000000000
+ precip_repartition_nonglc_all_rain_t = 2.0000000000000000
+
+ Read in lnd2atm_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ lnd2atm_inparm settings:
+&LND2ATM_INPARM
+ MELT_NON_ICESHEET_ICE_RUNOFF=T,
+ /
+
+ Read in clm_soilstate_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ (GETFIL): attempting to find local file clm5_params.c200402.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/paramdata/clm5_params.c200402.nc 589824
+ Attempting to read soil color, sand and clay boundary data .....
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 589824
+ Attempting to read organic matter data .....
+ organicrd /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 655360
+ Successfully read organic matter data
+
+ Read in water_tracers namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ water_tracers settings
+&WATER_TRACERS_INPARM
+ ENABLE_WATER_TRACER_CONSISTENCY_CHECKS=F,
+ ENABLE_WATER_ISOTOPES=F,
+ /
+
+ Read in aerosol namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ aerosol settings:
+&AEROSOL
+ FRESH_SNW_RDS_MAX= 204.52600000000001 ,
+ /
+
+ Read in friction_velocity namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ friction_velocity settings:
+&FRICTION_VELOCITY
+ ZETAMAXSTABLE= 0.50000000000000000 ,
+ /
+
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 589824
+ ncd_inqvid: variable ETALAKE is not on dataset
+ WARNING:: ETALAKE not found on surface data set. All lake columns will have eta set equal to default value as a function of depth.
+ ncd_inqvid: variable LAKEFETCH is not on dataset
+ WARNING:: LAKEFETCH not found on surface data set. All lake columns will have fetch set equal to default value as a function of depth.
+ Attempting to initialize time invariant variables for lakes
+ Successfully initialized time invariant variables for lakes
+ Read in clm_soilhydrology_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 589824
+ Attempting to read soil colo data .....
+ Read in scf_swenson_lawrence_2012_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ scf_swenson_lawrence_2012_inparm settings:
+&SCF_SWENSON_LAWRENCE_2012_INPARM
+ INT_SNOW_MAX= 2000.0000000000000 ,
+ N_MELT_GLCMEC= 10.000000000000000 ,
+ /
+
+ Read in irrigation_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ irrigation_inparm settings:
+ irrig_min_lai = 0.0000000000000000
+ irrig_start_time = 21600
+ irrig_length = 14400
+ irrig_target_smp = -3400.0000000000000
+ irrig_depth = 0.59999999999999998
+ irrig_threshold_fraction = 1.0000000000000000
+ limit_irrigation_if_rof_enabled = F
+ use_groundwater_irrigation = F
+ irrig_method_default = drip
+
+ Spinup_state 0
+ Spinup factors 1.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000 5.0000000000000000 222.22222900390625
+ (GETFIL): attempting to find local file surfdata_ALP1_simyr2000.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/surfdata_map/ALP1/surfdata_ALP1_simyr2000.nc 589824
+ Successfully read fmax, soil color, sand and clay boundary data
+
+ Read in lifire_inparm namelist
+ (OPNFIL): Successfully opened file lnd_in on unit= 96
+
+ lifire_inparm settings:
+&LIFIRE_INPARM
+ CLI_SCALE= 3.5000000000000003E-002,
+ BOREAL_PEATFIRE_C= 4.1999999999999998E-005,
+ POT_HMN_IGN_COUNTS_ALPHA= 3.5000000000000001E-003,
+ NON_BOREAL_PEATFIRE_C= 1.0000000000000000E-003,
+ CROPFIRE_A1= 0.29999999999999999 ,
+ RH_LOW= 30.000000000000000 ,
+ RH_HGH= 80.000000000000000 ,
+ BT_MIN= 0.29999999999999999 ,
+ BT_MAX= 0.69999999999999996 ,
+ OCCUR_HI_GDP_TREE= 0.39000000000000001 ,
+ LFUEL= 75.000000000000000 ,
+ UFUEL= 650.00000000000000 ,
+ CMB_CMPLT_FACT= 0.50000000000000000 , 0.25000000000000000 ,
+ /
+
+
+ Initializing variables for time accumulation .....
+------------------------------------------------------------
+ Accumulated fields
+ No Name Units Type Period Inival Description
+_______________________________________________________________________
+ 1 FSD24 W/m2 runmean 48 0. 24hr average of direct solar radiation
+ 2 FSD240 W/m2 runmean 480 0. 240hr average of direct solar radiation
+ 3 FSI24 W/m2 runmean 48 0. 24hr average of diffuse solar radiation
+ 4 FSI240 W/m2 runmean 480 0. 240hr average of diffuse solar radiation
+ 5 WIND24 m runmean 48 0. 24hr average of wind
+ 6 T_VEG24 K runmean 48 0. 24hr average of vegetation temperature
+ 7 T_VEG240 K runmean 480 0. 240hr average of vegetation temperature
+ 8 TREFAV K timeavg 2 0. average over an hour of 2-m temperature
+ 9 TREFAV_U K timeavg 2 0. average over an hour of urban 2-m temper
+ 10 TREFAV_R K timeavg 2 0. average over an hour of rural 2-m temper
+ 11 T10 K runmean 480 293. 10-day running mean of 2-m temperature
+ 12 PREC24 m runmean 48 0. 24hr sum of precipitation
+ 13 RH24 m runmean 48 100. 24hr average of RH
+ 14 BTRANAV - timeavg 2 0. average over an hour of btran
+ 15 FSUN24 fraction runmean 48 0. 24hr average of diffuse solar radiation
+ 16 FSUN240 fraction runmean 480 0. 240hr average of diffuse solar radiation
+ 17 LAI240 m2/m2 runmean 480 0. 240hr average of leaf area index
+_______________________________________________________________________
+
+------------------------------------------------------------
+ Successfully initialized variables for accumulation
+
+ Attempting to read snow optical properties .....
+ (GETFIL): attempting to find local file snicar_optics_5bnd_c090915.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc 458752
+ SnowOptics_init /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c090915.nc
+ Successfully read snow optical properties
+ SNICAR: Mie single scatter albedos for direct-beam ice, rds=100um: 0.99998855464297542 0.99968103719886303 0.99760760567597084 0.98649793425058974 0.86362501115905810
+ SNICAR: Mie single scatter albedos for diffuse ice, rds=100um: 0.99998868830564358 0.99969570486702131 0.99764126147987453 0.98842452132814818 0.87409591319270097
+ SNICAR: Excluding OC aerosols from snow radiative transfer calculations
+ SNICAR: Mie single scatter albedos for hydrophillic BC: 0.51594530551280438 0.43431362653642447 0.34610376599263543 0.27552292633055464 0.13857609644281504
+ SNICAR: Mie single scatter albedos for hydrophobic BC: 0.28768531597618147 0.18657727712522390 0.12315223708920099 8.8346288590554295E-002 4.0342156226937813E-002
+ SNICAR: Mie single scatter albedos for dust species 1: 0.97891105715304971 0.99417591604245092 0.99335758076220670 0.99254575131626566 0.95329155004677202
+ SNICAR: Mie single scatter albedos for dust species 2: 0.94375224880279296 0.98419166859941920 0.98930906391702478 0.99179394683626376 0.98299959066891252
+ SNICAR: Mie single scatter albedos for dust species 3: 0.90404453064604895 0.96465162969455487 0.96827580955152159 0.97259841987410656 0.97761241832987633
+ SNICAR: Mie single scatter albedos for dust species 4: 0.84981819535541647 0.94046032504434285 0.94831630553416912 0.95284117511780686 0.95537952819380212
+
+ Attempting to read snow aging parameters .....
+ (GETFIL): attempting to find local file snicar_drdt_bst_fit_60_c070416.nc
+ (GETFIL): using /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc
+ Opened existing file /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc 458752
+ SnowOptics_init /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc
+ Successfully read snow aging properties
+ SNICAR: snowage tau for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 6.3205800298267860
+ SNICAR: snowage kappa for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 1.5669689418953008
+ SNICAR: snowage dr/dt_0 for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 5.4872755027422642
+ CLM_hist_printflds : number of master fields = 882
+ ******* MASTER FIELD LIST *******
+ 1 SNO_Z m
+ 2 SNO_Z_ICE m
+ 3 ZII m
+ 4 SWBGT C
+ 5 SWBGT_U C
+ 6 SWBGT_R C
+ 7 HUMIDEX C
+ 8 HUMIDEX_U C
+ 9 HUMIDEX_R C
+ 10 WBT C
+ 11 WBT_U C
+ 12 WBT_R C
+ 13 HIA C
+ 14 HIA_U C
+ 15 HIA_R C
+ 16 TBUILD_MAX K
+ 17 WIND m/s
+ 18 Wind m/s
+ 19 ZBOT m
+ 20 ATM_TOPO m
+ 21 FSDS W/m^2
+ 22 PCO2 Pa
+ 23 SWdown W/m^2
+ 24 Tair_from_atm K
+ 25 TBOT K
+ 26 Tair K
+ 27 PBOT Pa
+ 28 PSurf Pa
+ 29 FLDS W/m^2
+ 30 LWdown W/m^2
+ 31 FLDS_ICE W/m^2
+ 32 THBOT K
+ 33 FSI24 K
+ 34 FSI240 K
+ 35 FSD24 K
+ 36 FSD240 K
+ 37 FSH_TO_COUPLER W/m^2
+ 38 FSH_RUNOFF_ICE_TO_LIQ W/m^2
+ 39 FCO2 kgCO2/m2/s
+ 40 ICE_MODEL_FRACTION unitless
+ 41 QICE_FORC mm/s
+ 42 TSRF_FORC K
+ 43 TOPO_FORC m
+ 44 TH2OSFC K
+ 45 TG_U K
+ 46 TLAKE K
+ 47 SNO_T K
+ 48 SNO_T_ICE K
+ 49 TSA K
+ 50 TSA_ICE K
+ 51 TSA_R K
+ 52 TREFMNAV K
+ 53 TREFMXAV K
+ 54 TREFMNAV_R K
+ 55 TREFMXAV_R K
+ 56 TSA_U K
+ 57 TREFMNAV_U K
+ 58 TREFMXAV_U K
+ 59 TV K
+ 60 TSKIN K
+ 61 TG K
+ 62 TG_ICE K
+ 63 TG_R K
+ 64 TSOI K
+ 65 TSOI_ICE K
+ 66 TSOI_10CM K
+ 67 TSL K
+ 68 SNOTXMASS K kg/m2
+ 69 SNOTXMASS_ICE K kg/m2
+ 70 T10 K
+ 71 TBUILD K
+ 72 TROOF_INNER K
+ 73 TSUNW_INNER K
+ 74 TSHDW_INNER K
+ 75 TFLOOR K
+ 76 HEAT_CONTENT1 J/m^2
+ 77 HEAT_CONTENT1_VEG J/m^2
+ 78 HEAT_CONTENT2 J/m^2
+ 79 LIQUID_WATER_TEMP1 K
+ 80 SNOTTOPL K
+ 81 SNOTTOPL_ICE K
+ 82 SNOdTdzL K/m
+ 83 TV24 K
+ 84 TV240 K
+ 85 ALT m
+ 86 ALTMAX m
+ 87 ALTMAX_LASTYEAR m
+ 88 ELAI m^2/m^2
+ 89 ESAI m^2/m^2
+ 90 TLAI m^2/m^2
+ 91 TSAI m^2/m^2
+ 92 LAISUN m^2/m^2
+ 93 LAISHA m^2/m^2
+ 94 FSUN proportion
+ 95 HTOP m
+ 96 HBOT m
+ 97 DISPLA m
+ 98 Z0M m
+ 99 FSUN24 K
+ 100 FSUN240 K
+ 101 LAI240 m^2/m^2
+ 102 RSCANOPY s m-1
+ 103 SMP mm
+ 104 KROOT 1/s
+ 105 KSOIL 1/s
+ 106 SOILPSI MPa
+ 107 SNO_TK W/m-K
+ 108 SNO_TK_ICE W/m-K
+ 109 HK mm/s
+ 110 SoilAlpha unitless
+ 111 SoilAlpha_U unitless
+ 112 SOILRESIS s/m
+ 113 DSL mm
+ 114 SNO_LIQH2O kg/m2
+ 115 SNO_ICE kg/m2
+ 116 H2OSOI mm3/mm3
+ 117 SOILLIQ kg/m2
+ 118 SOILICE kg/m2
+ 119 SNOCAN mm
+ 120 LIQCAN mm
+ 121 H2OSFC mm
+ 122 WA mm
+ 123 INT_SNOW mm
+ 124 INT_SNOW_ICE mm
+ 125 SNOW_PERSISTENCE seconds
+ 126 H2OCAN mm
+ 127 SOILWATER_10CM kg/m2
+ 128 TWS mm
+ 129 Q2M kg/kg
+ 130 SNOWLIQ kg/m2
+ 131 SNOWLIQ_ICE kg/m2
+ 132 SNOWICE kg/m2
+ 133 SNOWICE_ICE kg/m2
+ 134 H2OSNO mm
+ 135 H2OSNO_ICE mm
+ 136 TOTSOILLIQ kg/m2
+ 137 TOTSOILICE kg/m2
+ 138 RH2M %
+ 139 RH2M_R %
+ 140 RH2M_U %
+ 141 RHAF fraction
+ 142 FH2OSFC unitless
+ 143 FH2OSFC_NOSNOW unitless
+ 144 FSNO unitless
+ 145 FSNO_ICE unitless
+ 146 FSNO_EFF unitless
+ 147 SNOW_DEPTH m
+ 148 SNOW_DEPTH_ICE m
+ 149 SNOWDP m
+ 150 H2OSNO_TOP kg/m2
+ 151 SNORDSL m^-6
+ 152 SNOLIQFL fraction
+ 153 SNO_EXISTENCE unitless
+ 154 SNO_BW kg/m3
+ 155 SNO_BW_ICE kg/m3
+ 156 SNO_GS Microns
+ 157 SNO_GS_ICE Microns
+ 158 QINTR mm/s
+ 159 SNOW_SOURCES mm/s
+ 160 SNOW_SINKS mm/s
+ 161 LIQUID_CONTENT1 mm
+ 162 LIQUID_CONTENT2 mm
+ 163 ICE_CONTENT1 mm
+ 164 ICE_CONTENT2 mm
+ 165 ERRH2O mm
+ 166 ERRH2OSNO mm
+ 167 QDIRECT_THROUGHFALL mm/s
+ 168 QDIRECT_THROUGHFALL_SNOW mm/s
+ 169 QDRIP mm/s
+ 170 QDRIP_SNOW mm/s
+ 171 QSNOUNLOAD mm/s
+ 172 QTOPSOIL mm/s
+ 173 QINFL mm/s
+ 174 QOVER mm/s
+ 175 QRGWL mm/s
+ 176 QDRAI mm/s
+ 177 QDRAI_PERCH mm/s
+ 178 QFLX_LIQ_DYNBAL mm/s
+ 179 QFLX_ICE_DYNBAL mm/s
+ 180 QRUNOFF mm/s
+ 181 QRUNOFF_ICE mm/s
+ 182 QRUNOFF_U mm/s
+ 183 QRUNOFF_R mm/s
+ 184 QSNOMELT mm/s
+ 185 QSNOMELT_ICE mm/s
+ 186 QSNOFRZ kg/m2/s
+ 187 QSNOFRZ_ICE mm/s
+ 188 SNO_FRZ kg/m2/s
+ 189 SNO_FRZ_ICE mm/s
+ 190 QFLX_SNOW_DRAIN mm/s
+ 191 QFLX_SNOW_DRAIN_ICE mm/s
+ 192 QSOIL mm/s
+ 193 QSOIL_ICE mm/s
+ 194 QVEGE mm/s
+ 195 QVEGT mm/s
+ 196 QSNOCPLIQ mm H2O/s
+ 197 QSNWCPICE mm H2O/s
+ 198 QICE mm/s
+ 199 QICE_FRZ mm/s
+ 200 QICE_MELT mm/s
+ 201 QFLX_LIQ_GRND mm H2O/s
+ 202 QFLX_SNOW_GRND mm H2O/s
+ 203 QFLX_LIQEVAP_FROM_TOP_LAYER mm H2O/s
+ 204 QFLX_EVAP_VEG mm H2O/s
+ 205 QFLX_EVAP_TOT kg m-2 s-1
+ 206 QFLX_LIQDEW_TO_TOP_LAYER mm H2O/s
+ 207 QFLX_SOLIDEVAP_FROM_TOP_LAYER mm H2O/s
+ 208 QFLX_SOLIDEVAP_FROM_TOP_LAYER_IC mm H2O/s
+ 209 QFLX_SOLIDDEW_TO_TOP_LAYER mm H2O/s
+ 210 QDRAI_XS mm/s
+ 211 QH2OSFC_TO_ICE mm/s
+ 212 QIRRIG_FROM_SURFACE mm/s
+ 213 QIRRIG_FROM_GW_UNCONFINED mm/s
+ 214 QIRRIG_FROM_GW_CONFINED mm/s
+ 215 QIRRIG_DRIP mm/s
+ 216 QIRRIG_SPRINKLER mm/s
+ 217 SNO_MELT mm/s
+ 218 SNO_MELT_ICE mm/s
+ 219 QROOTSINK mm/s
+ 220 QSNO_WINDUNLOAD mm/s
+ 221 QSNO_TEMPUNLOAD mm/s
+ 222 QSNOEVAP mm/s
+ 223 QH2OSFC mm/s
+ 224 QPHSNEG mm/s
+ 225 AnnET mm/s
+ 226 QRUNOFF_TO_COUPLER mm/s
+ 227 QRUNOFF_ICE_TO_COUPLER mm/s
+ 228 QRUNOFF_ICE_TO_LIQ mm/s
+ 229 RAIN_FROM_ATM mm/s
+ 230 SNOW_FROM_ATM mm/s
+ 231 QBOT kg/kg
+ 232 Qair kg/kg
+ 233 QFLOOD mm/s
+ 234 RAIN mm/s
+ 235 Rainf mm/s
+ 236 RAIN_ICE mm/s
+ 237 SNOW mm/s
+ 238 SNOW_ICE mm/s
+ 239 VOLR m3
+ 240 VOLRMCH m3
+ 241 RH %
+ 242 EFLX_DYNBAL W/m^2
+ 243 FSM W/m^2
+ 244 FSM_ICE W/m^2
+ 245 FSM_R W/m^2
+ 246 FSM_U W/m^2
+ 247 FIRA W/m^2
+ 248 FIRA_ICE W/m^2
+ 249 FIRA_R W/m^2
+ 250 FIRE W/m^2
+ 251 LWup W/m^2
+ 252 FIRE_ICE W/m^2
+ 253 FIRE_R W/m^2
+ 254 FCTR W/m^2
+ 255 FCEV W/m^2
+ 256 FGEV W/m^2
+ 257 FSH W/m^2
+ 258 FSH_ICE W/m^2
+ 259 FSH_R W/m^2
+ 260 Qh W/m^2
+ 261 Qle W/m^2
+ 262 EFLX_LH_TOT W/m^2
+ 263 EFLX_LH_TOT_ICE W/m^2
+ 264 EFLX_LH_TOT_R W/m^2
+ 265 Qstor W/m^2
+ 266 FSH_V W/m^2
+ 267 FSH_G W/m^2
+ 268 FGR W/m^2
+ 269 FGR_ICE W/m^2
+ 270 FGR_R W/m^2
+ 271 FIRA_U W/m^2
+ 272 EFLX_SOIL_GRND W/m^2
+ 273 FIRE_U W/m^2
+ 274 FSH_U W/m^2
+ 275 FSH_PRECIP_CONVERSION W/m^2
+ 276 EFLX_LH_TOT_U W/m^2
+ 277 FGR_U W/m^2
+ 278 Rnet W/m^2
+ 279 EFLX_GRND_LAKE W/m^2
+ 280 EFLXBUILD W/m^2
+ 281 URBAN_AC W/m^2
+ 282 URBAN_HEAT W/m^2
+ 283 DGNETDT W/m^2/K
+ 284 FGR12 W/m^2
+ 285 FGR_SOIL_R watt/m^2
+ 286 TRAFFICFLUX W/m^2
+ 287 WASTEHEAT W/m^2
+ 288 HEAT_FROM_AC W/m^2
+ 289 TAUX kg/m/s^2
+ 290 Qtau kg/m/s^2
+ 291 TAUY kg/m/s^2
+ 292 BTRAN unitless
+ 293 BTRANMN unitless
+ 294 BTRAN2 unitless
+ 295 ERRSOI W/m^2
+ 296 ERRSEB W/m^2
+ 297 ERRSOL W/m^2
+ 298 DSTDEP kg/m^2/s
+ 299 BCDEP kg/m^2/s
+ 300 OCDEP kg/m^2/s
+ 301 SNOBCMCL kg/m2
+ 302 SNOBCMSL kg/m2
+ 303 SNOOCMCL kg/m2
+ 304 SNOOCMSL kg/m2
+ 305 SNODSTMCL kg/m2
+ 306 SNODSTMSL kg/m2
+ 307 Z0MG m
+ 308 Z0HG m
+ 309 Z0QG m
+ 310 VA m/s
+ 311 U10 m/s
+ 312 U10_ICE m/s
+ 313 U10_DUST m/s
+ 314 LAKEICEFRAC unitless
+ 315 LAKEICEFRAC_SURF unitless
+ 316 LAKEICETHICK m
+ 317 TKE1 W/(mK)
+ 318 RAM_LAKE s/m
+ 319 UST_LAKE m/s
+ 320 RH_LEAF fraction
+ 321 LNC gN leaf/m^2
+ 322 RSSUN s/m
+ 323 RSSHA s/m
+ 324 GSSUN umol H20/m2/s
+ 325 GSSHA umol H20/m2/s
+ 326 GSSUNLN umol H20/m2/s
+ 327 GSSHALN umol H20/m2/s
+ 328 QCHARGE mm/s
+ 329 NSUBSTEPS unitless
+ 330 FROST_TABLE m
+ 331 ZWT m
+ 332 ZWT_PERCH m
+ 333 FCOV unitless
+ 334 FSAT unitless
+ 335 FSA W/m^2
+ 336 FSA_ICE W/m^2
+ 337 FSA_R W/m^2
+ 338 FSA_U W/m^2
+ 339 FSR W/m^2
+ 340 SWup W/m^2
+ 341 FSR_ICE W/m^2
+ 342 SNO_ABS W/m^2
+ 343 SNO_ABS_ICE W/m^2
+ 344 SABV W/m^2
+ 345 SABG W/m^2
+ 346 SABG_PEN watt/m^2
+ 347 FSDSND W/m^2
+ 348 FSDSNI W/m^2
+ 349 FSDSNDLN W/m^2
+ 350 FSRND W/m^2
+ 351 FSRNI W/m^2
+ 352 FSRNDLN W/m^2
+ 353 SNOINTABS -
+ 354 COSZEN none
+ 355 ALBGRD proportion
+ 356 ALBGRI proportion
+ 357 ALBD proportion
+ 358 ALBI proportion
+ 359 FSDSVD W/m^2
+ 360 FSDSVI W/m^2
+ 361 FSRVD W/m^2
+ 362 FSRVI W/m^2
+ 363 FSDSVDLN W/m^2
+ 364 FSDSVILN W/m^2
+ 365 PARVEGLN W/m^2
+ 366 FSRVDLN W/m^2
+ 367 SNOFSDSVD W/m^2
+ 368 SNOFSDSND W/m^2
+ 369 SNOFSDSVI W/m^2
+ 370 SNOFSDSNI W/m^2
+ 371 SNOFSRVD W/m^2
+ 372 SNOFSRND W/m^2
+ 373 SNOFSRVI W/m^2
+ 374 SNOFSRNI W/m^2
+ 375 DSTFLXT kg/m2/s
+ 376 DPVLTRB1 m/s
+ 377 DPVLTRB2 m/s
+ 378 DPVLTRB3 m/s
+ 379 DPVLTRB4 m/s
+ 380 QIRRIG_DEMAND mm/s
+ 381 TOPO_COL m
+ 382 TOPO_COL_ICE m
+ 383 SOILC_vr gC/m^3
+ 384 LITR1C_vr gC/m^3
+ 385 LITR1C gC/m^2
+ 386 LITR1C_1m gC/m^2
+ 387 LITR2C_vr gC/m^3
+ 388 LITR2C gC/m^2
+ 389 LITR2C_1m gC/m^2
+ 390 LITR3C_vr gC/m^3
+ 391 LITR3C gC/m^2
+ 392 LITR3C_1m gC/m^2
+ 393 SOIL1C_vr gC/m^3
+ 394 SOIL1C gC/m^2
+ 395 SOIL1C_1m gC/m^2
+ 396 SOIL2C_vr gC/m^3
+ 397 SOIL2C gC/m^2
+ 398 SOIL2C_1m gC/m^2
+ 399 SOIL3C_vr gC/m^3
+ 400 SOIL3C gC/m^2
+ 401 SOIL3C_1m gC/m^2
+ 402 TOTLITC gC/m^2
+ 403 TOTSOMC gC/m^2
+ 404 TOTLITC_1m gC/m^2
+ 405 TOTSOMC_1m gC/m^2
+ 406 COL_CTRUNC gC/m^2
+ 407 DYN_COL_SOIL_ADJUSTMENTS_C gC/m^2
+ 408 HR gC/m^2/s
+ 409 LITTERC_HR gC/m^2/s
+ 410 SOILC_HR gC/m^2/s
+ 411 SOMC_FIRE gC/m^2/s
+ 412 K_LITR1 1/s
+ 413 K_LITR2 1/s
+ 414 K_LITR3 1/s
+ 415 K_SOIL1 1/s
+ 416 K_SOIL2 1/s
+ 417 K_SOIL3 1/s
+ 418 LITR1_HR gC/m^2/s
+ 419 LITR1C_TO_SOIL1C gC/m^2/s
+ 420 LITR1_HR_vr gC/m^3/s
+ 421 LITR1C_TO_SOIL1C_vr gC/m^3/s
+ 422 LITR2_HR gC/m^2/s
+ 423 LITR2C_TO_SOIL1C gC/m^2/s
+ 424 LITR2_HR_vr gC/m^3/s
+ 425 LITR2C_TO_SOIL1C_vr gC/m^3/s
+ 426 LITR3_HR gC/m^2/s
+ 427 LITR3C_TO_SOIL2C gC/m^2/s
+ 428 LITR3_HR_vr gC/m^3/s
+ 429 LITR3C_TO_SOIL2C_vr gC/m^3/s
+ 430 SOIL1_HR_S2 gC/m^2/s
+ 431 SOIL1C_TO_SOIL2C gC/m^2/s
+ 432 SOIL1_HR_S2_vr gC/m^3/s
+ 433 SOIL1C_TO_SOIL2C_vr gC/m^3/s
+ 434 SOIL1_HR_S3 gC/m^2/s
+ 435 SOIL1C_TO_SOIL3C gC/m^2/s
+ 436 SOIL1_HR_S3_vr gC/m^3/s
+ 437 SOIL1C_TO_SOIL3C_vr gC/m^3/s
+ 438 SOIL2_HR_S1 gC/m^2/s
+ 439 SOIL2C_TO_SOIL1C gC/m^2/s
+ 440 SOIL2_HR_S1_vr gC/m^3/s
+ 441 SOIL2C_TO_SOIL1C_vr gC/m^3/s
+ 442 SOIL2_HR_S3 gC/m^2/s
+ 443 SOIL2C_TO_SOIL3C gC/m^2/s
+ 444 SOIL2_HR_S3_vr gC/m^3/s
+ 445 SOIL2C_TO_SOIL3C_vr gC/m^3/s
+ 446 SOIL3_HR gC/m^2/s
+ 447 SOIL3C_TO_SOIL1C gC/m^2/s
+ 448 SOIL3_HR_vr gC/m^3/s
+ 449 SOIL3C_TO_SOIL1C_vr gC/m^3/s
+ 450 T_SCALAR unitless
+ 451 W_SCALAR unitless
+ 452 O_SCALAR unitless
+ 453 SOM_C_LEACHED gC/m^2/s
+ 454 M_LITR1C_TO_LEACHING gC/m^2/s
+ 455 LITR1C_TNDNCY_VERT_TRANS gC/m^3/s
+ 456 M_LITR2C_TO_LEACHING gC/m^2/s
+ 457 LITR2C_TNDNCY_VERT_TRANS gC/m^3/s
+ 458 M_LITR3C_TO_LEACHING gC/m^2/s
+ 459 LITR3C_TNDNCY_VERT_TRANS gC/m^3/s
+ 460 M_SOIL1C_TO_LEACHING gC/m^2/s
+ 461 SOIL1C_TNDNCY_VERT_TRANS gC/m^3/s
+ 462 M_SOIL2C_TO_LEACHING gC/m^2/s
+ 463 SOIL2C_TNDNCY_VERT_TRANS gC/m^3/s
+ 464 M_SOIL3C_TO_LEACHING gC/m^2/s
+ 465 SOIL3C_TNDNCY_VERT_TRANS gC/m^3/s
+ 466 HR_vr gC/m^3/s
+ 467 FATES_c_to_litr_lab_c gC/m^3/s
+ 468 FATES_c_to_litr_cel_c gC/m^3/s
+ 469 FATES_c_to_litr_lig_c gC/m^3/s
+ 470 SOILN_vr gN/m^3
+ 471 LITR1N_vr gN/m^3
+ 472 LITR1N gN/m^2
+ 473 LITR1N_1m gN/m^2
+ 474 LITR2N_vr gN/m^3
+ 475 LITR2N gN/m^2
+ 476 LITR2N_1m gN/m^2
+ 477 LITR3N_vr gN/m^3
+ 478 LITR3N gN/m^2
+ 479 LITR3N_1m gN/m^2
+ 480 SOIL1N_vr gN/m^3
+ 481 SOIL1N gN/m^2
+ 482 SOIL1N_1m gN/m^2
+ 483 SOIL2N_vr gN/m^3
+ 484 SOIL2N gN/m^2
+ 485 SOIL2N_1m gN/m^2
+ 486 SOIL3N_vr gN/m^3
+ 487 SOIL3N gN/m^2
+ 488 SOIL3N_1m gN/m^2
+ 489 SMINN gN/m^2
+ 490 TOTLITN_1m gN/m^2
+ 491 TOTSOMN_1m gN/m^2
+ 492 COL_NTRUNC gN/m^2
+ 493 SMINN_vr gN/m^3
+ 494 TOTLITN gN/m^2
+ 495 TOTSOMN gN/m^2
+ 496 DYN_COL_SOIL_ADJUSTMENTS_N gN/m^2
+ 497 NDEP_TO_SMINN gN/m^2/s
+ 498 NFIX_TO_SMINN gN/m^2/s
+ 499 SMINN_TO_SOIL1N_L1 gN/m^2
+ 500 LITR1N_TO_SOIL1N gN/m^2
+ 501 SMINN_TO_SOIL1N_L1_vr gN/m^3
+ 502 LITR1N_TO_SOIL1N_vr gN/m^3
+ 503 SMINN_TO_SOIL1N_L2 gN/m^2
+ 504 LITR2N_TO_SOIL1N gN/m^2
+ 505 SMINN_TO_SOIL1N_L2_vr gN/m^3
+ 506 LITR2N_TO_SOIL1N_vr gN/m^3
+ 507 SMINN_TO_SOIL2N_L3 gN/m^2
+ 508 LITR3N_TO_SOIL2N gN/m^2
+ 509 SMINN_TO_SOIL2N_L3_vr gN/m^3
+ 510 LITR3N_TO_SOIL2N_vr gN/m^3
+ 511 SMINN_TO_SOIL2N_S1 gN/m^2
+ 512 SOIL1N_TO_SOIL2N gN/m^2
+ 513 SMINN_TO_SOIL2N_S1_vr gN/m^3
+ 514 SOIL1N_TO_SOIL2N_vr gN/m^3
+ 515 SMINN_TO_SOIL3N_S1 gN/m^2
+ 516 SOIL1N_TO_SOIL3N gN/m^2
+ 517 SMINN_TO_SOIL3N_S1_vr gN/m^3
+ 518 SOIL1N_TO_SOIL3N_vr gN/m^3
+ 519 SMINN_TO_SOIL1N_S2 gN/m^2
+ 520 SOIL2N_TO_SOIL1N gN/m^2
+ 521 SMINN_TO_SOIL1N_S2_vr gN/m^3
+ 522 SOIL2N_TO_SOIL1N_vr gN/m^3
+ 523 SMINN_TO_SOIL3N_S2 gN/m^2
+ 524 SOIL2N_TO_SOIL3N gN/m^2
+ 525 SMINN_TO_SOIL3N_S2_vr gN/m^3
+ 526 SOIL2N_TO_SOIL3N_vr gN/m^3
+ 527 SMINN_TO_SOIL1N_S3 gN/m^2
+ 528 SOIL3N_TO_SOIL1N gN/m^2
+ 529 SMINN_TO_SOIL1N_S3_vr gN/m^3
+ 530 SOIL3N_TO_SOIL1N_vr gN/m^3
+ 531 DENIT gN/m^2/s
+ 532 SOM_N_LEACHED gN/m^2/s
+ 533 M_LITR1N_TO_LEACHING gN/m^2/s
+ 534 LITR1N_TNDNCY_VERT_TRANS gN/m^3/s
+ 535 M_LITR2N_TO_LEACHING gN/m^2/s
+ 536 LITR2N_TNDNCY_VERT_TRANS gN/m^3/s
+ 537 M_LITR3N_TO_LEACHING gN/m^2/s
+ 538 LITR3N_TNDNCY_VERT_TRANS gN/m^3/s
+ 539 M_SOIL1N_TO_LEACHING gN/m^2/s
+ 540 SOIL1N_TNDNCY_VERT_TRANS gN/m^3/s
+ 541 M_SOIL2N_TO_LEACHING gN/m^2/s
+ 542 SOIL2N_TNDNCY_VERT_TRANS gN/m^3/s
+ 543 M_SOIL3N_TO_LEACHING gN/m^2/s
+ 544 SOIL3N_TNDNCY_VERT_TRANS gN/m^3/s
+ 545 SMINN_TO_DENIT_L1S1 gN/m^2
+ 546 SMINN_TO_DENIT_L1S1_vr gN/m^3
+ 547 SMINN_TO_DENIT_L2S1 gN/m^2
+ 548 SMINN_TO_DENIT_L2S1_vr gN/m^3
+ 549 SMINN_TO_DENIT_L3S2 gN/m^2
+ 550 SMINN_TO_DENIT_L3S2_vr gN/m^3
+ 551 SMINN_TO_DENIT_S1S2 gN/m^2
+ 552 SMINN_TO_DENIT_S1S2_vr gN/m^3
+ 553 SMINN_TO_DENIT_S1S3 gN/m^2
+ 554 SMINN_TO_DENIT_S1S3_vr gN/m^3
+ 555 SMINN_TO_DENIT_S2S1 gN/m^2
+ 556 SMINN_TO_DENIT_S2S1_vr gN/m^3
+ 557 SMINN_TO_DENIT_S2S3 gN/m^2
+ 558 SMINN_TO_DENIT_S2S3_vr gN/m^3
+ 559 SMINN_TO_DENIT_S3S1 gN/m^2
+ 560 SMINN_TO_DENIT_S3S1_vr gN/m^3
+ 561 SMINN_TO_DENIT_EXCESS gN/m^2/s
+ 562 SMINN_LEACHED gN/m^2/s
+ 563 SMINN_TO_DENIT_EXCESS_vr gN/m^3/s
+ 564 SMINN_LEACHED_vr gN/m^3/s
+ 565 POTENTIAL_IMMOB gN/m^2/s
+ 566 ACTUAL_IMMOB gN/m^2/s
+ 567 SMINN_TO_PLANT gN/m^2/s
+ 568 SUPPLEMENT_TO_SMINN gN/m^2/s
+ 569 GROSS_NMIN gN/m^2/s
+ 570 NET_NMIN gN/m^2/s
+ 571 ED_NPATCHES none
+ 572 ED_NCOHORTS none
+ 573 TRIMMING none
+ 574 AREA_PLANT m2
+ 575 AREA_TREES m2
+ 576 SITE_COLD_STATUS 0,1,2
+ 577 SITE_DROUGHT_STATUS 0,1,2,3
+ 578 SITE_GDD degC
+ 579 SITE_NCHILLDAYS days
+ 580 SITE_NCOLDDAYS days
+ 581 SITE_DAYSINCE_COLDLEAFOFF days
+ 582 SITE_DAYSINCE_COLDLEAFON days
+ 583 SITE_DAYSINCE_DROUGHTLEAFOFF days
+ 584 SITE_DAYSINCE_DROUGHTLEAFON days
+ 585 SITE_MEANLIQVOL_DROUGHTPHEN m3/m3
+ 586 CANOPY_SPREAD 0-1
+ 587 PFTbiomass gC/m2
+ 588 PFTleafbiomass gC/m2
+ 589 PFTstorebiomass gC/m2
+ 590 PFTcrownarea m2/ha
+ 591 PFTcanopycrownarea m2/ha
+ 592 PFTnindivs indiv / m2
+ 593 RECRUITMENT indiv/ha/yr
+ 594 MORTALITY indiv/ha/yr
+ 595 PATCH_AREA_BY_AGE m2/m2
+ 596 LAI_BY_AGE m2/m2
+ 597 CANOPY_AREA_BY_AGE m2/m2
+ 598 NCL_BY_AGE --
+ 599 NPATCH_BY_AGE --
+ 600 ZSTAR_BY_AGE m
+ 601 CANOPY_HEIGHT_DIST m2/m2
+ 602 LEAF_HEIGHT_DIST m2/m2
+ 603 BIOMASS_BY_AGE kgC/m2
+ 604 SECONDARY_FOREST_FRACTION m2/m2
+ 605 WOOD_PRODUCT gC/m2
+ 606 SECONDARY_FOREST_BIOMASS kgC/m2
+ 607 SECONDARY_AREA_AGE_ANTHRO_DIST m2/m2
+ 608 SECONDARY_AREA_PATCH_AGE_DIST m2/m2
+ 609 FIRE_NESTEROV_INDEX none
+ 610 FIRE_ROS m/min
+ 611 FIRE_ROS_AREA_PRODUCT m/min
+ 612 EFFECT_WSPEED none
+ 613 FIRE_TFC_ROS kgC/m2
+ 614 FIRE_TFC_ROS_AREA_PRODUCT kgC/m2
+ 615 FIRE_INTENSITY kJ/m/s
+ 616 FIRE_INTENSITY_AREA_PRODUCT kJ/m/s
+ 617 FIRE_AREA fraction
+ 618 FIRE_FUEL_MEF m
+ 619 FIRE_FUEL_BULKD kg biomass/m3
+ 620 FIRE_FUEL_EFF_MOIST m
+ 621 FIRE_FUEL_SAV per m
+ 622 SUM_FUEL gC m-2
+ 623 FUEL_MOISTURE_NFSC -
+ 624 AREA_BURNT_BY_PATCH_AGE m2/m2
+ 625 FIRE_INTENSITY_BY_PATCH_AGE kJ/m/2
+ 626 SUM_FUEL_BY_PATCH_AGE gC / m2 of site
+ 627 BURNT_LITTER_FRAC_AREA_PRODUCT fraction
+ 628 LITTER_IN gC m-2 s-1
+ 629 LITTER_OUT gC m-2 s-1
+ 630 SEED_BANK gC m-2
+ 631 SEEDS_IN gC m-2 s-1
+ 632 LITTER_IN_ELEM kg ha-1 d-1
+ 633 LITTER_OUT_ELEM kg ha-1 d-1
+ 634 SEED_BANK_ELEM kg ha-1
+ 635 SEEDS_IN_LOCAL_ELEM kg ha-1 d-1
+ 636 SEEDS_IN_EXTERN_ELEM kg ha-1 d-1
+ 637 SEED_GERM_ELEM kg ha-1 d-1
+ 638 SEED_DECAY_ELEM kg ha-1 d-1
+ 639 STOREC kgC ha-1
+ 640 TOTVEGC kgC ha-1
+ 641 SAPWC kgC ha-1
+ 642 LEAFC kgC ha-1
+ 643 FNRTC kgC ha-1
+ 644 REPROC kgC ha-1
+ 645 CEFFLUX kgC/ha/day
+ 646 ED_bstore gC m-2
+ 647 ED_bdead gC m-2
+ 648 ED_balive gC m-2
+ 649 ED_bleaf gC m-2
+ 650 ED_bsapwood gC m-2
+ 651 ED_bfineroot gC m-2
+ 652 ED_biomass gC m-2
+ 653 AGB gC m-2
+ 654 BIOMASS_CANOPY gC m-2
+ 655 BIOMASS_UNDERSTORY gC m-2
+ 656 PRIMARYLAND_PATCHFUSION_ERROR m2 m-2 d-1
+ 657 DISTURBANCE_RATE_P2P m2 m-2 d-1
+ 658 DISTURBANCE_RATE_P2S m2 m-2 d-1
+ 659 DISTURBANCE_RATE_S2S m2 m-2 d-1
+ 660 DISTURBANCE_RATE_FIRE m2 m-2 d-1
+ 661 DISTURBANCE_RATE_LOGGING m2 m-2 d-1
+ 662 DISTURBANCE_RATE_TREEFALL m2 m-2 d-1
+ 663 DISTURBANCE_RATE_POTENTIAL m2 m-2 d-1
+ 664 HARVEST_CARBON_FLUX kg C m-2 d-1
+ 665 C_STOMATA umol m-2 s-1
+ 666 C_LBLAYER umol m-2 s-1
+ 667 NPP gC/m^2/s
+ 668 GPP gC/m^2/s
+ 669 AR gC/m^2/s
+ 670 GROWTH_RESP gC/m^2/s
+ 671 MAINT_RESP gC/m^2/s
+ 672 C_STOMATA_BY_AGE umol m-2 s-1
+ 673 C_LBLAYER_BY_AGE umol m-2 s-1
+ 674 NPP_BY_AGE gC/m^2/s
+ 675 GPP_BY_AGE gC/m^2/s
+ 676 GPP_CANOPY gC/m^2/s
+ 677 AR_CANOPY gC/m^2/s
+ 678 GPP_UNDERSTORY gC/m^2/s
+ 679 AR_UNDERSTORY gC/m^2/s
+ 680 PARSUN_Z_CNLF W/m2
+ 681 PARSHA_Z_CNLF W/m2
+ 682 PARSUN_Z_CNLFPFT W/m2
+ 683 PARSHA_Z_CNLFPFT W/m2
+ 684 PARSUN_Z_CAN W/m2
+ 685 PARSHA_Z_CAN W/m2
+ 686 LAISUN_Z_CNLF m2/m2
+ 687 LAISHA_Z_CNLF m2/m2
+ 688 LAISUN_Z_CNLFPFT m2/m2
+ 689 LAISHA_Z_CNLFPFT m2/m2
+ 690 LAISUN_TOP_CAN m2/m2
+ 691 LAISHA_TOP_CAN m2/m2
+ 692 FABD_SUN_CNLFPFT fraction
+ 693 FABD_SHA_CNLFPFT fraction
+ 694 FABI_SUN_CNLFPFT fraction
+ 695 FABI_SHA_CNLFPFT fraction
+ 696 FABD_SUN_CNLF fraction
+ 697 FABD_SHA_CNLF fraction
+ 698 FABI_SUN_CNLF fraction
+ 699 FABI_SHA_CNLF fraction
+ 700 PARPROF_DIR_CNLFPFT W/m2
+ 701 PARPROF_DIF_CNLFPFT W/m2
+ 702 PARPROF_DIR_CNLF W/m2
+ 703 PARPROF_DIF_CNLF W/m2
+ 704 FABD_SUN_TOPLF_BYCANLAYER fraction
+ 705 FABD_SHA_TOPLF_BYCANLAYER fraction
+ 706 FABI_SUN_TOPLF_BYCANLAYER fraction
+ 707 FABI_SHA_TOPLF_BYCANLAYER fraction
+ 708 NET_C_UPTAKE_CNLF gC/m2/s
+ 709 CROWNAREA_CNLF m2/m2
+ 710 CROWNAREA_CAN m2/m2
+ 711 DEMOTION_CARBONFLUX gC/m2/s
+ 712 PROMOTION_CARBONFLUX gC/m2/s
+ 713 MORTALITY_CARBONFLUX_CANOPY gC/m2/s
+ 714 MORTALITY_CARBONFLUX_UNDERSTORY gC/m2/s
+ 715 NPLANT_SCAG plants/ha
+ 716 NPLANT_CANOPY_SCAG plants/ha
+ 717 NPLANT_UNDERSTORY_SCAG plants/ha
+ 718 DDBH_CANOPY_SCAG cm/yr/ha
+ 719 DDBH_UNDERSTORY_SCAG cm/yr/ha
+ 720 MORTALITY_CANOPY_SCAG plants/ha/yr
+ 721 MORTALITY_UNDERSTORY_SCAG plants/ha/yr
+ 722 NPLANT_SCAGPFT plants/ha
+ 723 NPP_AGEPFT kgC/m2/yr
+ 724 BIOMASS_AGEPFT kg C / m2
+ 725 SCORCH_HEIGHT m
+ 726 GPP_SCPF kgC/m2/yr
+ 727 GPP_CANOPY_SCPF kgC/m2/yr
+ 728 AR_CANOPY_SCPF kgC/m2/yr
+ 729 GPP_UNDERSTORY_SCPF kgC/m2/yr
+ 730 AR_UNDERSTORY_SCPF kgC/m2/yr
+ 731 NPP_SCPF kgC/m2/yr
+ 732 NPP_LEAF_SCPF kgC/m2/yr
+ 733 NPP_SEED_SCPF kgC/m2/yr
+ 734 NPP_FNRT_SCPF kgC/m2/yr
+ 735 NPP_BGSW_SCPF kgC/m2/yr
+ 736 NPP_BGDW_SCPF kgC/m2/yr
+ 737 NPP_AGSW_SCPF kgC/m2/yr
+ 738 NPP_AGDW_SCPF kgC/m2/yr
+ 739 NPP_STOR_SCPF kgC/m2/yr
+ 740 DDBH_SCPF cm/yr/ha
+ 741 GROWTHFLUX_SCPF n/yr/ha
+ 742 GROWTHFLUX_FUSION_SCPF n/yr/ha
+ 743 DDBH_CANOPY_SCPF cm/yr/ha
+ 744 DDBH_UNDERSTORY_SCPF cm/yr/ha
+ 745 BA_SCPF m2/ha
+ 746 AGB_SCPF kgC/m2
+ 747 NPLANT_SCPF N/ha
+ 748 NPLANT_CAPF N/ha
+ 749 M1_SCPF N/ha/yr
+ 750 M2_SCPF N/ha/yr
+ 751 M3_SCPF N/ha/yr
+ 752 M4_SCPF N/ha/yr
+ 753 M5_SCPF N/ha/yr
+ 754 CROWNFIREMORT_SCPF N/ha/yr
+ 755 CAMBIALFIREMORT_SCPF N/ha/yr
+ 756 M6_SCPF N/ha/yr
+ 757 M7_SCPF N/ha/event
+ 758 M8_SCPF N/ha/yr
+ 759 M9_SCPF N/ha/yr
+ 760 M10_SCPF N/ha/yr
+ 761 M10_CAPF N/ha/yr
+ 762 MORTALITY_CANOPY_SCPF N/ha/yr
+ 763 C13disc_SCPF per mil
+ 764 BSTOR_CANOPY_SCPF kgC/ha
+ 765 BLEAF_CANOPY_SCPF kgC/ha
+ 766 NPLANT_CANOPY_SCPF N/ha
+ 767 MORTALITY_UNDERSTORY_SCPF N/ha/yr
+ 768 BSTOR_UNDERSTORY_SCPF kgC/ha
+ 769 BLEAF_UNDERSTORY_SCPF kgC/ha
+ 770 NPLANT_UNDERSTORY_SCPF N/ha
+ 771 CWD_AG_CWDSC gC/m^2
+ 772 CWD_BG_CWDSC gC/m^2
+ 773 CWD_AG_IN_CWDSC gC/m^2/y
+ 774 CWD_BG_IN_CWDSC gC/m^2/y
+ 775 CWD_AG_OUT_CWDSC gC/m^2/y
+ 776 CWD_BG_OUT_CWDSC gC/m^2/y
+ 777 AR_SCPF kgC/m2/yr
+ 778 AR_GROW_SCPF kgC/m2/yr
+ 779 AR_MAINT_SCPF kgC/m2/yr
+ 780 AR_DARKM_SCPF kgC/m2/yr
+ 781 AR_AGSAPM_SCPF kgC/m2/yr
+ 782 AR_CROOTM_SCPF kgC/m2/yr
+ 783 AR_FROOTM_SCPF kgC/m2/yr
+ 784 DDBH_CANOPY_SCLS cm/yr/ha
+ 785 DDBH_UNDERSTORY_SCLS cm/yr/ha
+ 786 YESTERDAYCANLEV_CANOPY_SCLS indiv/ha
+ 787 YESTERDAYCANLEV_UNDERSTORY_SCLS indiv/ha
+ 788 BA_SCLS m2/ha
+ 789 AGB_SCLS kgC/m2
+ 790 BIOMASS_SCLS kgC/m2
+ 791 DEMOTION_RATE_SCLS indiv/ha/yr
+ 792 PROMOTION_RATE_SCLS indiv/ha/yr
+ 793 NPLANT_CANOPY_SCLS indiv/ha
+ 794 LAI_CANOPY_SCLS m2/m2
+ 795 SAI_CANOPY_SCLS m2/m2
+ 796 MORTALITY_CANOPY_SCLS indiv/ha/yr
+ 797 NPLANT_UNDERSTORY_SCLS indiv/ha
+ 798 LAI_UNDERSTORY_SCLS indiv/ha
+ 799 SAI_UNDERSTORY_SCLS indiv/ha
+ 800 NPLANT_SCLS indiv/ha
+ 801 NPLANT_CACLS indiv/ha
+ 802 M1_SCLS N/ha/yr
+ 803 M2_SCLS N/ha/yr
+ 804 M3_SCLS N/ha/yr
+ 805 M4_SCLS N/ha/yr
+ 806 M5_SCLS N/ha/yr
+ 807 M6_SCLS N/ha/yr
+ 808 M7_SCLS N/ha/event
+ 809 M8_SCLS N/ha/event
+ 810 M9_SCLS N/ha/yr
+ 811 M10_SCLS N/ha/yr
+ 812 M10_CACLS N/ha/yr
+ 813 CARBON_BALANCE_CANOPY_SCLS kg C / ha / yr
+ 814 CARBON_BALANCE_UNDERSTORY_SCLS kg C / ha / yr
+ 815 MORTALITY_UNDERSTORY_SCLS indiv/ha/yr
+ 816 TRIMMING_CANOPY_SCLS indiv/ha
+ 817 TRIMMING_UNDERSTORY_SCLS indiv/ha
+ 818 CROWN_AREA_CANOPY_SCLS m2/ha
+ 819 CROWN_AREA_UNDERSTORY_SCLS m2/ha
+ 820 LEAF_MD_CANOPY_SCLS kg C / ha / yr
+ 821 ROOT_MD_CANOPY_SCLS kg C / ha / yr
+ 822 BSTORE_MD_CANOPY_SCLS kg C / ha / yr
+ 823 BDEAD_MD_CANOPY_SCLS kg C / ha / yr
+ 824 BSW_MD_CANOPY_SCLS kg C / ha / yr
+ 825 SEED_PROD_CANOPY_SCLS kg C / ha / yr
+ 826 NPP_LEAF_CANOPY_SCLS kg C / ha / yr
+ 827 NPP_FROOT_CANOPY_SCLS kg C / ha / yr
+ 828 NPP_BSW_CANOPY_SCLS kg C / ha / yr
+ 829 NPP_BDEAD_CANOPY_SCLS kg C / ha / yr
+ 830 NPP_BSEED_CANOPY_SCLS kg C / ha / yr
+ 831 NPP_STORE_CANOPY_SCLS kg C / ha / yr
+ 832 LEAF_MR kg C / m2 / yr
+ 833 FROOT_MR kg C / m2 / yr
+ 834 LIVECROOT_MR kg C / m2 / yr
+ 835 LIVESTEM_MR kg C / m2 / yr
+ 836 RDARK_CANOPY_SCLS kg C / ha / yr
+ 837 LIVESTEM_MR_CANOPY_SCLS kg C / ha / yr
+ 838 LIVECROOT_MR_CANOPY_SCLS kg C / ha / yr
+ 839 FROOT_MR_CANOPY_SCLS kg C / ha / yr
+ 840 RESP_G_CANOPY_SCLS kg C / ha / yr
+ 841 RESP_M_CANOPY_SCLS kg C / ha / yr
+ 842 LEAF_MD_UNDERSTORY_SCLS kg C / ha / yr
+ 843 ROOT_MD_UNDERSTORY_SCLS kg C / ha / yr
+ 844 BSTORE_MD_UNDERSTORY_SCLS kg C / ha / yr
+ 845 BDEAD_MD_UNDERSTORY_SCLS kg C / ha / yr
+ 846 BSW_MD_UNDERSTORY_SCLS kg C / ha / yr
+ 847 SEED_PROD_UNDERSTORY_SCLS kg C / ha / yr
+ 848 NPP_LEAF_UNDERSTORY_SCLS kg C / ha / yr
+ 849 NPP_FROOT_UNDERSTORY_SCLS kg C / ha / yr
+ 850 NPP_BSW_UNDERSTORY_SCLS kg C / ha / yr
+ 851 NPP_BDEAD_UNDERSTORY_SCLS kg C / ha / yr
+ 852 NPP_BSEED_UNDERSTORY_SCLS kg C / ha / yr
+ 853 NPP_STORE_UNDERSTORY_SCLS kg C / ha / yr
+ 854 RDARK_UNDERSTORY_SCLS kg C / ha / yr
+ 855 LIVESTEM_MR_UNDERSTORY_SCLS kg C / ha / yr
+ 856 LIVECROOT_MR_UNDERSTORY_SCLS kg C / ha / yr
+ 857 FROOT_MR_UNDERSTORY_SCLS kg C / ha / yr
+ 858 RESP_G_UNDERSTORY_SCLS kg C / ha / yr
+ 859 RESP_M_UNDERSTORY_SCLS kg C / ha / yr
+ 860 NEP gC/m^2/s
+ 861 Fire_Closs gC/m^2/s
+ 862 FIRE_FLUX g/m^2/s
+ 863 CBALANCE_ERROR_FATES mgC/day
+ 864 ERROR_FATES mg/day
+ 865 LITTER_FINES_AG_ELEM kg ha-1
+ 866 LITTER_FINES_BG_ELEM kg ha-1
+ 867 LITTER_CWD_BG_ELEM kg ha-1
+ 868 LITTER_CWD_AG_ELEM kg ha-1
+ 869 LITTER_CWD kg ha-1
+ 870 TOTVEGC_SCPF kgC/ha
+ 871 LEAFC_SCPF kgC/ha
+ 872 FNRTC_SCPF kgC/ha
+ 873 SAPWC_SCPF kgC/ha
+ 874 STOREC_SCPF kgC/ha
+ 875 REPROC_SCPF kgC/ha
+ 876 CEFFLUX_SCPF kg/ha/day
+ 877 NPP_LEAF kgC/m2/yr
+ 878 NPP_SEED kgC/m2/yr
+ 879 NPP_STEM kgC/m2/yr
+ 880 NPP_FROOT kgC/m2/yr
+ 881 NPP_CROOT kgC/m2/yr
+ 882 NPP_STOR kgC/m2/yr
+ Using cold start initial conditions
+ hist_htapes_build Initializing clm2 history files
+------------------------------------------------------------
+ htapes_fieldlist : Included fields tape 1 = 415
+ 1 ACTUAL_IMMOB 1 A
+ 2 AGB 1 A
+ 3 AGB_SCLS 13 A
+ 4 AR 1 A
+ 5 AREA_BURNT_BY_PATCH_AGE 7 A
+ 6 AREA_PLANT 1 A
+ 7 AREA_TREES 1 A
+ 8 AR_CANOPY 1 A
+ 9 AR_UNDERSTORY 1 A
+ 10 ATM_TOPO 1 A
+ 11 BA_SCLS 13 A
+ 12 BCDEP 1 A
+ 13 BIOMASS_CANOPY 1 A
+ 14 BIOMASS_UNDERSTORY 1 A
+ 15 BTRAN 1 A
+ 16 BTRAN2 1 A
+ 17 BTRANMN 1 A
+ 18 BURNT_LITTER_FRAC_AREA_PRODUCT 6 A
+ 19 CANOPY_AREA_BY_AGE 7 A
+ 20 CANOPY_HEIGHT_DIST 6 A
+ 21 CANOPY_SPREAD 1 A
+ 22 CBALANCE_ERROR_FATES 1 A
+ 23 CEFFLUX 1 A
+ 24 CROWNAREA_CAN 2 A
+ 25 C_LBLAYER 1 A
+ 26 C_STOMATA 1 A
+ 27 DDBH_CANOPY_SCLS 13 A
+ 28 DDBH_UNDERSTORY_SCLS 13 A
+ 29 DEMOTION_CARBONFLUX 1 A
+ 30 DENIT 1 A
+ 31 DISTURBANCE_RATE_FIRE 1 A
+ 32 DISTURBANCE_RATE_LOGGING 1 A
+ 33 DISTURBANCE_RATE_P2P 1 A
+ 34 DISTURBANCE_RATE_P2S 1 A
+ 35 DISTURBANCE_RATE_POTENTIAL 1 A
+ 36 DISTURBANCE_RATE_S2S 1 A
+ 37 DISTURBANCE_RATE_TREEFALL 1 A
+ 38 DSL 1 A
+ 39 DSTDEP 1 A
+ 40 DSTFLXT 1 A
+ 41 ED_NCOHORTS 1 A
+ 42 ED_NPATCHES 1 A
+ 43 ED_balive 1 A
+ 44 ED_bdead 1 A
+ 45 ED_bfineroot 1 A
+ 46 ED_biomass 1 A
+ 47 ED_bleaf 1 A
+ 48 ED_bsapwood 1 A
+ 49 ED_bstore 1 A
+ 50 EFFECT_WSPEED 1 A
+ 51 EFLXBUILD 1 A
+ 52 EFLX_DYNBAL 1 A
+ 53 EFLX_GRND_LAKE 1 A
+ 54 EFLX_LH_TOT 1 A
+ 55 EFLX_LH_TOT_R 1 A
+ 56 ELAI 1 A
+ 57 ERRH2O 1 A
+ 58 ERRH2OSNO 1 A
+ 59 ERROR_FATES 1 A
+ 60 ERRSEB 1 A
+ 61 ERRSOI 1 A
+ 62 ERRSOL 1 A
+ 63 ESAI 1 A
+ 64 FATES_c_to_litr_cel_c 25 A
+ 65 FATES_c_to_litr_lab_c 25 A
+ 66 FATES_c_to_litr_lig_c 25 A
+ 67 FCEV 1 A
+ 68 FCOV 1 A
+ 69 FCTR 1 A
+ 70 FGEV 1 A
+ 71 FGR 1 A
+ 72 FGR12 1 A
+ 73 FH2OSFC 1 A
+ 74 FIRA 1 A
+ 75 FIRA_R 1 A
+ 76 FIRE 1 A
+ 77 FIRE_AREA 1 A
+ 78 FIRE_FLUX 1 A
+ 79 FIRE_FUEL_BULKD 1 A
+ 80 FIRE_FUEL_EFF_MOIST 1 A
+ 81 FIRE_FUEL_MEF 1 A
+ 82 FIRE_FUEL_SAV 1 A
+ 83 FIRE_INTENSITY 1 A
+ 84 FIRE_INTENSITY_AREA_PRODUCT 1 A
+ 85 FIRE_INTENSITY_BY_PATCH_AGE 7 A
+ 86 FIRE_NESTEROV_INDEX 1 A
+ 87 FIRE_R 1 A
+ 88 FIRE_ROS 1 A
+ 89 FIRE_ROS_AREA_PRODUCT 1 A
+ 90 FIRE_TFC_ROS 1 A
+ 91 FIRE_TFC_ROS_AREA_PRODUCT 1 A
+ 92 FLDS 1 A
+ 93 FNRTC 1 A
+ 94 FROOT_MR 1 A
+ 95 FSA 1 A
+ 96 FSAT 1 A
+ 97 FSDS 1 A
+ 98 FSDSND 1 A
+ 99 FSDSNDLN 1 A
+ 100 FSDSNI 1 A
+ 101 FSDSVD 1 A
+ 102 FSDSVDLN 1 A
+ 103 FSDSVI 1 A
+ 104 FSDSVILN 1 A
+ 105 FSH 1 A
+ 106 FSH_G 1 A
+ 107 FSH_PRECIP_CONVERSION 1 A
+ 108 FSH_R 1 A
+ 109 FSH_RUNOFF_ICE_TO_LIQ 1 A
+ 110 FSH_TO_COUPLER 1 A
+ 111 FSH_V 1 A
+ 112 FSM 1 A
+ 113 FSNO 1 A
+ 114 FSNO_EFF 1 A
+ 115 FSR 1 A
+ 116 FSRND 1 A
+ 117 FSRNDLN 1 A
+ 118 FSRNI 1 A
+ 119 FSRVD 1 A
+ 120 FSRVDLN 1 A
+ 121 FSRVI 1 A
+ 122 FUEL_MOISTURE_NFSC 6 A
+ 123 Fire_Closs 1 A
+ 124 GPP 1 A
+ 125 GPP_CANOPY 1 A
+ 126 GPP_UNDERSTORY 1 A
+ 127 GROSS_NMIN 1 A
+ 128 GROWTH_RESP 1 A
+ 129 GSSHA 1 A
+ 130 GSSHALN 1 A
+ 131 GSSUN 1 A
+ 132 GSSUNLN 1 A
+ 133 H2OCAN 1 A
+ 134 H2OSFC 1 A
+ 135 H2OSNO 1 A
+ 136 H2OSNO_TOP 1 A
+ 137 H2OSOI 20 A
+ 138 HARVEST_CARBON_FLUX 1 A
+ 139 HEAT_CONTENT1 1 A
+ 140 HEAT_FROM_AC 1 A
+ 141 HIA 1 A
+ 142 HIA_R 1 A
+ 143 HIA_U 1 A
+ 144 HR 1 A
+ 145 HR_vr 20 A
+ 146 HTOP 1 A
+ 147 HUMIDEX 1 A
+ 148 HUMIDEX_R 1 A
+ 149 HUMIDEX_U 1 A
+ 150 ICE_CONTENT1 1 A
+ 151 LAISHA 1 A
+ 152 LAISUN 1 A
+ 153 LAI_BY_AGE 7 A
+ 154 LAI_CANOPY_SCLS 13 A
+ 155 LAI_UNDERSTORY_SCLS 13 A
+ 156 LAKEICEFRAC_SURF 1 A
+ 157 LAKEICETHICK 1 A
+ 158 LEAFC 1 A
+ 159 LEAF_HEIGHT_DIST 6 A
+ 160 LEAF_MR 1 A
+ 161 LIQCAN 1 A
+ 162 LIQUID_CONTENT1 1 A
+ 163 LITR1C 1 A
+ 164 LITR1C_vr 20 A
+ 165 LITR1N 1 A
+ 166 LITR1N_vr 25 A
+ 167 LITR2C 1 A
+ 168 LITR2C_vr 20 A
+ 169 LITR2N 1 A
+ 170 LITR2N_vr 25 A
+ 171 LITR3C 1 A
+ 172 LITR3C_vr 20 A
+ 173 LITR3N 1 A
+ 174 LITR3N_vr 25 A
+ 175 LITTERC_HR 1 A
+ 176 LITTER_CWD 4 A
+ 177 LITTER_CWD_AG_ELEM 1 A
+ 178 LITTER_CWD_BG_ELEM 1 A
+ 179 LITTER_FINES_AG_ELEM 1 A
+ 180 LITTER_FINES_BG_ELEM 1 A
+ 181 LITTER_IN 1 A
+ 182 LITTER_IN_ELEM 1 A
+ 183 LITTER_OUT 1 A
+ 184 LITTER_OUT_ELEM 1 A
+ 185 LIVECROOT_MR 1 A
+ 186 LIVESTEM_MR 1 A
+ 187 LNC 1 A
+ 188 M10_CACLS 2 A
+ 189 M10_SCLS 13 A
+ 190 M1_SCLS 13 A
+ 191 M2_SCLS 13 A
+ 192 M3_SCLS 13 A
+ 193 M4_SCLS 13 A
+ 194 M5_SCLS 13 A
+ 195 M6_SCLS 13 A
+ 196 M7_SCLS 13 A
+ 197 M8_SCLS 13 A
+ 198 M9_SCLS 13 A
+ 199 MAINT_RESP 1 A
+ 200 MORTALITY 12 A
+ 201 MORTALITY_CANOPY_SCLS 13 A
+ 202 MORTALITY_CARBONFLUX_CANOPY 1 A
+ 203 MORTALITY_CARBONFLUX_UNDERSTORY 1 A
+ 204 MORTALITY_UNDERSTORY_SCLS 13 A
+ 205 NDEP_TO_SMINN 1 A
+ 206 NEP 1 A
+ 207 NET_NMIN 1 A
+ 208 NFIX_TO_SMINN 1 A
+ 209 NPLANT_CACLS 2 A
+ 210 NPLANT_CANOPY_SCLS 13 A
+ 211 NPLANT_SCAG 91 A
+ 212 NPLANT_SCLS 13 A
+ 213 NPLANT_UNDERSTORY_SCLS 13 A
+ 214 NPP 1 A
+ 215 NPP_CROOT 1 A
+ 216 NPP_FROOT 1 A
+ 217 NPP_LEAF 1 A
+ 218 NPP_SEED 1 A
+ 219 NPP_STEM 1 A
+ 220 NPP_STOR 1 A
+ 221 OCDEP 1 A
+ 222 O_SCALAR 20 A
+ 223 PARVEGLN 1 A
+ 224 PATCH_AREA_BY_AGE 7 A
+ 225 PBOT 1 A
+ 226 PCO2 1 A
+ 227 PCT_GLC_MEC 10 A
+ 228 PCT_LANDUNIT 9 A
+ 229 PFTbiomass 12 A
+ 230 PFTleafbiomass 12 A
+ 231 PFTnindivs 12 A
+ 232 PFTstorebiomass 12 A
+ 233 POTENTIAL_IMMOB 1 A
+ 234 PRIMARYLAND_PATCHFUSION_ERROR 1 A
+ 235 PROMOTION_CARBONFLUX 1 A
+ 236 Q2M 1 A
+ 237 QBOT 1 A
+ 238 QCHARGE 1 A
+ 239 QDRAI 1 A
+ 240 QDRAI_PERCH 1 A
+ 241 QDRAI_XS 1 A
+ 242 QFLOOD 1 A
+ 243 QFLX_EVAP_TOT 1 A
+ 244 QFLX_ICE_DYNBAL 1 A
+ 245 QFLX_LIQDEW_TO_TOP_LAYER 1 A
+ 246 QFLX_LIQEVAP_FROM_TOP_LAYER 1 A
+ 247 QFLX_LIQ_DYNBAL 1 A
+ 248 QFLX_SNOW_DRAIN 1 A
+ 249 QFLX_SNOW_DRAIN_ICE 1 A
+ 250 QFLX_SOLIDDEW_TO_TOP_LAYER 1 A
+ 251 QFLX_SOLIDEVAP_FROM_TOP_LAYER 1 A
+ 252 QH2OSFC 1 A
+ 253 QICE 1 A
+ 254 QICE_FRZ 1 A
+ 255 QICE_MELT 1 A
+ 256 QINFL 1 A
+ 257 QINTR 1 A
+ 258 QIRRIG_FROM_GW_CONFINED 1 A
+ 259 QIRRIG_FROM_GW_UNCONFINED 1 A
+ 260 QIRRIG_FROM_SURFACE 1 A
+ 261 QOVER 1 A
+ 262 QRGWL 1 A
+ 263 QRUNOFF 1 A
+ 264 QRUNOFF_ICE 1 A
+ 265 QRUNOFF_ICE_TO_COUPLER 1 A
+ 266 QRUNOFF_TO_COUPLER 1 A
+ 267 QSNOCPLIQ 1 A
+ 268 QSNOEVAP 1 A
+ 269 QSNOFRZ 1 A
+ 270 QSNOFRZ_ICE 1 A
+ 271 QSNOMELT 1 A
+ 272 QSNOMELT_ICE 1 A
+ 273 QSNOUNLOAD 1 A
+ 274 QSNO_TEMPUNLOAD 1 A
+ 275 QSNO_WINDUNLOAD 1 A
+ 276 QSNWCPICE 1 A
+ 277 QSOIL 1 A
+ 278 QSOIL_ICE 1 A
+ 279 QVEGE 1 A
+ 280 QVEGT 1 A
+ 281 RAIN 1 A
+ 282 RAIN_FROM_ATM 1 A
+ 283 RECRUITMENT 12 A
+ 284 REPROC 1 A
+ 285 RH2M 1 A
+ 286 RSCANOPY 1 A
+ 287 RSSHA 1 M
+ 288 RSSUN 1 M
+ 289 SABG 1 A
+ 290 SABG_PEN 1 A
+ 291 SABV 1 A
+ 292 SAPWC 1 A
+ 293 SCORCH_HEIGHT 84 A
+ 294 SEEDS_IN 1 A
+ 295 SEEDS_IN_EXTERN_ELEM 1 A
+ 296 SEEDS_IN_LOCAL_ELEM 1 A
+ 297 SEED_BANK 1 A
+ 298 SEED_BANK_ELEM 1 A
+ 299 SEED_DECAY_ELEM 1 A
+ 300 SEED_GERM_ELEM 1 A
+ 301 SITE_COLD_STATUS 1 A
+ 302 SITE_DAYSINCE_COLDLEAFOFF 1 A
+ 303 SITE_DAYSINCE_COLDLEAFON 1 A
+ 304 SITE_DAYSINCE_DROUGHTLEAFOFF 1 A
+ 305 SITE_DAYSINCE_DROUGHTLEAFON 1 A
+ 306 SITE_DROUGHT_STATUS 1 A
+ 307 SITE_GDD 1 A
+ 308 SITE_MEANLIQVOL_DROUGHTPHEN 1 A
+ 309 SITE_NCHILLDAYS 1 A
+ 310 SITE_NCOLDDAYS 1 A
+ 311 SMINN 1 A
+ 312 SMINN_LEACHED 1 A
+ 313 SMINN_TO_PLANT 1 A
+ 314 SMINN_vr 20 A
+ 315 SMP 25 A
+ 316 SNOBCMCL 1 A
+ 317 SNOBCMSL 1 A
+ 318 SNOCAN 1 A
+ 319 SNODSTMCL 1 A
+ 320 SNODSTMSL 1 A
+ 321 SNOFSRND 1 A
+ 322 SNOFSRNI 1 A
+ 323 SNOFSRVD 1 A
+ 324 SNOFSRVI 1 A
+ 325 SNOINTABS 1 A
+ 326 SNOOCMCL 1 A
+ 327 SNOOCMSL 1 A
+ 328 SNOTXMASS 1 A
+ 329 SNOW 1 A
+ 330 SNOWDP 1 A
+ 331 SNOWICE 1 A
+ 332 SNOWLIQ 1 A
+ 333 SNOW_DEPTH 1 A
+ 334 SNOW_FROM_ATM 1 A
+ 335 SNOW_PERSISTENCE 1 I
+ 336 SNOW_SINKS 1 A
+ 337 SNOW_SOURCES 1 A
+ 338 SOIL1C 1 A
+ 339 SOIL1C_vr 20 A
+ 340 SOIL1N 1 A
+ 341 SOIL1N_vr 25 A
+ 342 SOIL2C 1 A
+ 343 SOIL2C_vr 20 A
+ 344 SOIL2N 1 A
+ 345 SOIL2N_vr 25 A
+ 346 SOIL3C 1 A
+ 347 SOIL3C_vr 20 A
+ 348 SOIL3N 1 A
+ 349 SOIL3N_vr 25 A
+ 350 SOILC_HR 1 A
+ 351 SOILC_vr 20 A
+ 352 SOILICE 20 A
+ 353 SOILLIQ 20 A
+ 354 SOILN_vr 25 A
+ 355 SOILRESIS 1 A
+ 356 SOILWATER_10CM 1 A
+ 357 SOMC_FIRE 1 A
+ 358 SOM_C_LEACHED 1 A
+ 359 STOREC 1 A
+ 360 SUM_FUEL 1 A
+ 361 SUM_FUEL_BY_PATCH_AGE 7 A
+ 362 SUPPLEMENT_TO_SMINN 1 A
+ 363 SWBGT 1 A
+ 364 SWBGT_R 1 A
+ 365 SWBGT_U 1 A
+ 366 TAUX 1 A
+ 367 TAUY 1 A
+ 368 TBOT 1 A
+ 369 TBUILD 1 A
+ 370 TG 1 A
+ 371 TH2OSFC 1 A
+ 372 THBOT 1 A
+ 373 TKE1 1 A
+ 374 TLAI 1 A
+ 375 TLAKE 10 A
+ 376 TOTLITC 1 A
+ 377 TOTLITC_1m 1 A
+ 378 TOTLITN 1 A
+ 379 TOTLITN_1m 1 A
+ 380 TOTSOILICE 1 A
+ 381 TOTSOILLIQ 1 A
+ 382 TOTSOMC 1 A
+ 383 TOTSOMC_1m 1 A
+ 384 TOTSOMN 1 A
+ 385 TOTSOMN_1m 1 A
+ 386 TOTVEGC 1 A
+ 387 TREFMNAV 1 A
+ 388 TREFMXAV 1 A
+ 389 TRIMMING 1 A
+ 390 TSA 1 A
+ 391 TSAI 1 A
+ 392 TSKIN 1 A
+ 393 TSL 1 A
+ 394 TSOI 25 A
+ 395 TSOI_10CM 1 A
+ 396 TSOI_ICE 25 A
+ 397 TV 1 A
+ 398 TWS 1 A
+ 399 T_SCALAR 20 A
+ 400 U10 1 A
+ 401 U10_DUST 1 A
+ 402 URBAN_AC 1 A
+ 403 URBAN_HEAT 1 A
+ 404 VOLR 1 A
+ 405 VOLRMCH 1 A
+ 406 WA 1 A
+ 407 WASTEHEAT 1 A
+ 408 WBT 1 A
+ 409 WBT_R 1 A
+ 410 WBT_U 1 A
+ 411 WIND 1 A
+ 412 W_SCALAR 20 A
+ 413 ZBOT 1 A
+ 414 ZWT 1 A
+ 415 ZWT_PERCH 1 A
+ There will be a total of 1 history tapes
+
+ History tape 1 write frequency is MONTHLY
+ All fields on history tape 1 are grid averaged
+ Number of time samples on history tape 1 is 120
+ Output precision on history tape 1 = 2
+
+ hist_htapes_build hist tape = 1 written with dov2xy= T
+ hist_htapes_build Successfully initialized clm2 history files
+------------------------------------------------------------
+ Successfully initialized the land model
+ begin initial run at:
+ nstep= 0 year= 2000 month= 1 day= 1 seconds= 0
+
+************************************************************
+
+ dtime_sync= 1800 dtime_clm= 1800 mod = 0
+ clm: completed timestep 0
+ clm: calling FATES model 1
+FATES Dynamics: 2000-01-01
+ clm: leaving fates model 1 1
+ clm: completed timestep 1
+ hist_htapes_wrapup : history tape 1 : no open file to close
+ writing restart file ./test.clm2.r.2000-01-01-01800.nc for model date = 2000-01-01-01800
+
+ restFile_open: writing restart dataset at ./test.clm2.r.2000-01-01-01800.nc at nstep = 1
+
+ Opened file ./test.clm2.r.2000-01-01-01800.nc to write 458752
+ htape_create : Opening netcdf rhtape ./test.clm2.rh0.2000-01-01-01800.nc
+ Opened file ./test.clm2.rh0.2000-01-01-01800.nc to write 589824
+ htape_create : Successfully defined netcdf restart history file 1
+ Successfully wrote local restart file ./test.clm2.r.2000-01-01-01800.nc
+------------------------------------------------------------
+
+ (OPNFIL): Successfully opened file ./rpointer.lnd on unit= 95
+ Successfully wrote local restart pointer file
+ Successfully wrote out restart data at nstep = 1
+------------------------------------------------------------
diff -r 000000000000 -r 8c7414c07367 test-data/restart.tar
Binary file test-data/restart.tar has changed
diff -r 000000000000 -r 8c7414c07367 test-data/restart_info.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/restart_info.txt Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,4 @@
+test.datm.r.2000-01-01-01800.nc
+test.datm.rs1.2000-01-01-01800.bin
+test.cpl.r.2000-01-01-01800.nc
+./test.clm2.r.2000-01-01-01800.nc
diff -r 000000000000 -r 8c7414c07367 test-data/rof.log
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rof.log Wed Oct 21 20:30:35 2020 +0000
@@ -0,0 +1,14 @@
+(rof_init_mct) :MOSART model initialization
+ mosart npes = 1
+ mosart iam = 0
+ inst_name = ROF
+ Read in mosart_inparm namelist from: mosart_in
+ define run:
+ run type = initial
+ coupling_period = 10800
+ delt_mosart = 3600
+ decomp option = roundrobin
+ bypass_routing option = direct_in_place
+ qgwl runoff option = threshold
+ smat option = Xonly
+ MOSART will not be active
diff -r 000000000000 -r 8c7414c07367 test-data/workdir.tar