Mercurial > repos > climate > psy_maps

comparison psymap_simple.py @ 1:706666d912d5 draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
author climate
date Sat, 05 Oct 2019 17:11:18 -0400
parents db8d76da4174
children
comparison
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0:db8d76da4174 1:706666d912d5
15 # optional arguments: 15 # optional arguments:
16 # -h, --help show this help message and exit 16 # -h, --help show this help message and exit
17 # --proj PROJ Specify the projection on which we draw 17 # --proj PROJ Specify the projection on which we draw
18 # --cmap CMAP Specify which colormap to use for plotting 18 # --cmap CMAP Specify which colormap to use for plotting
19 # --output OUTPUT output filename to store resulting image (png format) 19 # --output OUTPUT output filename to store resulting image (png format)
20 # --time TIMES time index from the file for multiple plots ("0 1 2 3")
21 # --nrow NROW number of rows for multiple plot grid
22 # --ncol NCOL number of columns for multiple plot grid
23 # --format date format such as %Y (for year) %B (for month), etc.
24 # --title plot or subplot title
20 # -v, --verbose switch on verbose mode 25 # -v, --verbose switch on verbose mode
21 # 26 #
22 27
23 import argparse 28 import argparse
24 import warnings 29 import warnings
27 import matplotlib as mpl 32 import matplotlib as mpl
28 mpl.use('Agg') 33 mpl.use('Agg')
29 from matplotlib import pyplot # noqa: I202,E402 34 from matplotlib import pyplot # noqa: I202,E402
30 35
31 import psyplot.project as psy # noqa: I202,E402 36 import psyplot.project as psy # noqa: I202,E402
37 from psyplot import rcParams # noqa: I202,E402
32 38
33 39
34 class PsyPlot (): 40 class PsyPlot ():
35 def __init__(self, input, proj, varname, cmap, output, 41 def __init__(self, input, proj, varname, cmap, output, verbose=False,
36 verbose=False 42 time=[], nrow=1, ncol=1, format="%B %e, %Y",
37 ): 43 title=""):
38 self.input = input 44 self.input = input
39 self.proj = proj 45 self.proj = proj
40 self.varname = varname 46 self.varname = varname
41 self.cmap = cmap 47 self.cmap = cmap
48 self.time = time
49 if format is None:
50 self.format = ""
51 else:
52 self.format = format.replace('X', '%')
53 if title is None:
54 self.title = ""
55 else:
56 self.title = title
57 if ncol is None:
58 self.ncol = 1
59 else:
60 self.ncol = int(ncol)
61 if nrow is None:
62 self.nrow = 1
63 else:
64 self.nrow = int(nrow)
42 if output is None: 65 if output is None:
43 self.output = Path(input).stem + '.png' 66 self.output = Path(input).stem + '.png'
44 else: 67 else:
45 self.output = output 68 self.output = output
46 self.verbose = verbose 69 self.verbose = verbose
47 if verbose: 70 if verbose:
48 print("input: ", self.input) 71 print("input: ", self.input)
49 print("proj: ", self.proj) 72 print("proj: ", self.proj)
50 print("varname: ", self.varname) 73 print("varname: ", self.varname)
51 print("cmap: ", self.cmap) 74 print("cmap: ", self.cmap)
75 print("time: ", self.time)
76 print("ncol: ", self.ncol)
77 print("nrow: ", self.nrow)
78 print("title: ", self.title)
79 print("date format: ", self.format)
52 print("output: ", self.output) 80 print("output: ", self.output)
53 81
54 def plot(self): 82 def plot(self):
83 if self.title and self.format:
84 title = self.title + "\n" + self.format
85 elif not self.title and self.format:
86 title = self.format
87 elif self.title and not self.format:
88 title = self.title
89 else:
90 title = '%(long_name)s'
91
55 if self.cmap is None and self.proj is None: 92 if self.cmap is None and self.proj is None:
56 print("op1") 93 psy.plot.mapplot(self.input, name=self.varname,
57 psy.plot.mapplot(self.input, name=self.varname, 94 title=title,
58 clabel='{desc}') 95 clabel='{desc}')
59 elif self.proj is None or self.proj == '': 96 elif self.proj is None or not self.proj:
60 print("op2") 97 psy.plot.mapplot(self.input, name=self.varname,
61 psy.plot.mapplot(self.input, name=self.varname, 98 title=title,
62 cmap=self.cmap, clabel='{desc}') 99 cmap=self.cmap, clabel='{desc}')
63 elif self.cmap is None or self.cmap == '': 100 elif self.cmap is None or not self.cmap:
64 print("op3")
65 psy.plot.mapplot(self.input, name=self.varname, 101 psy.plot.mapplot(self.input, name=self.varname,
66 projection=self.proj, 102 projection=self.proj,
103 title=title,
67 clabel='{desc}') 104 clabel='{desc}')
68 else: 105 else:
69 print("op4")
70 psy.plot.mapplot(self.input, name=self.varname, 106 psy.plot.mapplot(self.input, name=self.varname,
71 cmap=self.cmap, 107 cmap=self.cmap,
72 projection=self.proj, 108 projection=self.proj,
109 title=title,
73 clabel='{desc}') 110 clabel='{desc}')
74 111
75 pyplot.savefig(self.output) 112 pyplot.savefig(self.output)
76 113
77 114 def multiple_plot(self):
78 def psymap_plot(input, proj, varname, cmap, output, verbose): 115 if not self.format:
116 self.format = "%B %e, %Y"
117
118 if not self.title:
119 title = self.format
120 else:
121 title = self.title + "\n" + self.format
122 mpl.rcParams['figure.figsize'] = [20, 8]
123 mpl.rcParams.update({'font.size': 8})
124 rcParams.update({'plotter.maps.grid_labelsize': 8.0})
125 if self.cmap is None and self.proj is None:
126 m = psy.plot.mapplot(self.input, name=self.varname,
127 title=title,
128 ax=(self.nrow, self.ncol),
129 time=self.time, sort=['time'],
130 clabel='{desc}')
131 m.share(keys='bounds')
132 elif self.proj is None or not self.proj:
133 m = psy.plot.mapplot(self.input, name=self.varname,
134 title=title,
135 ax=(self.nrow, self.ncol),
136 time=self.time, sort=['time'],
137 cmap=self.cmap, clabel='{desc}')
138 m.share(keys='bounds')
139 elif self.cmap is None or not self.cmap:
140 m = psy.plot.mapplot(self.input, name=self.varname,
141 projection=self.proj,
142 ax=(self.nrow, self.ncol),
143 time=self.time, sort=['time'],
144 title=title,
145 clabel='{desc}')
146 m.share(keys='bounds')
147 else:
148 m = psy.plot.mapplot(self.input, name=self.varname,
149 cmap=self.cmap,
150 projection=self.proj,
151 ax=(self.nrow, self.ncol),
152 time=self.time, sort=['time'],
153 title=title,
154 clabel='{desc}')
155 m.share(keys='bounds')
156
157 pyplot.savefig(self.output)
158
159
160 def psymap_plot(input, proj, varname, cmap, output, verbose, time,
161 nrow, ncol, format, title):
79 """Generate plot from input filename""" 162 """Generate plot from input filename"""
80 163
81 p = PsyPlot(input, proj, varname, cmap, output, verbose) 164 p = PsyPlot(input, proj, varname, cmap, output, verbose, time,
82 p.plot() 165 nrow, ncol, format, title)
166 if len(time) == 0:
167 p.plot()
168 else:
169 p.multiple_plot()
83 170
84 171
85 if __name__ == '__main__': 172 if __name__ == '__main__':
86 warnings.filterwarnings("ignore") 173 warnings.filterwarnings("ignore")
87 parser = argparse.ArgumentParser() 174 parser = argparse.ArgumentParser()
103 help='Specify which colormap to use for plotting' 190 help='Specify which colormap to use for plotting'
104 ) 191 )
105 parser.add_argument( 192 parser.add_argument(
106 '--output', 193 '--output',
107 help='output filename to store resulting image (png format)' 194 help='output filename to store resulting image (png format)'
195 )
196 parser.add_argument(
197 '--time',
198 help='list of times to plot for multiple plots'
199 )
200 parser.add_argument(
201 '--format',
202 help='format for date/time (default is Month d, yyyy)'
203 )
204 parser.add_argument(
205 '--title',
206 help='plot title'
207 )
208 parser.add_argument(
209 '--ncol',
210 help='number of columns for multiple plots'
211 )
212 parser.add_argument(
213 '--nrow',
214 help='number of rows for multiple plots'
108 ) 215 )
109 parser.add_argument( 216 parser.add_argument(
110 "-v", "--verbose", 217 "-v", "--verbose",
111 help="switch on verbose mode", 218 help="switch on verbose mode",
112 action="store_true") 219 action="store_true")
113 args = parser.parse_args() 220 args = parser.parse_args()
114 221
222 if args.time is None:
223 time = []
224 else:
225 time = list(map(int, args.time.split(",")))
115 psymap_plot(args.input, args.proj, args.varname, args.cmap, 226 psymap_plot(args.input, args.proj, args.varname, args.cmap,
116 args.output, args.verbose) 227 args.output, args.verbose, time,
228 args.nrow, args.ncol, args.format, args.title)