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comparison clustalomega/clustal-omega-1.0.2/src/squid/Makefile.in @ 1:bc707542e5de
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author | clustalomega |
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date | Thu, 21 Jul 2011 13:35:08 -0400 |
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1 # Makefile.in generated by automake 1.11.1 from Makefile.am. | |
2 # @configure_input@ | |
3 | |
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, | |
5 # 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, | |
6 # Inc. | |
7 # This Makefile.in is free software; the Free Software Foundation | |
8 # gives unlimited permission to copy and/or distribute it, | |
9 # with or without modifications, as long as this notice is preserved. | |
10 | |
11 # This program is distributed in the hope that it will be useful, | |
12 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without | |
13 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A | |
14 # PARTICULAR PURPOSE. | |
15 | |
16 @SET_MAKE@ | |
17 | |
18 # Replaces squids own automake files | |
19 # | |
20 # Some useful automake documentation: | |
21 # http://www.openismus.com/documents/linux/automake/automake.shtml | |
22 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html | |
23 | |
24 | |
25 VPATH = @srcdir@ | |
26 pkgdatadir = $(datadir)/@PACKAGE@ | |
27 pkgincludedir = $(includedir)/@PACKAGE@ | |
28 pkglibdir = $(libdir)/@PACKAGE@ | |
29 pkglibexecdir = $(libexecdir)/@PACKAGE@ | |
30 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd | |
31 install_sh_DATA = $(install_sh) -c -m 644 | |
32 install_sh_PROGRAM = $(install_sh) -c | |
33 install_sh_SCRIPT = $(install_sh) -c | |
34 INSTALL_HEADER = $(INSTALL_DATA) | |
35 transform = $(program_transform_name) | |
36 NORMAL_INSTALL = : | |
37 PRE_INSTALL = : | |
38 POST_INSTALL = : | |
39 NORMAL_UNINSTALL = : | |
40 PRE_UNINSTALL = : | |
41 POST_UNINSTALL = : | |
42 build_triplet = @build@ | |
43 host_triplet = @host@ | |
44 subdir = src/squid | |
45 DIST_COMMON = $(library_include_HEADERS) $(srcdir)/Makefile.am \ | |
46 $(srcdir)/Makefile.in | |
47 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 | |
48 am__aclocal_m4_deps = $(top_srcdir)/m4/ax_prefix_config_h.m4 \ | |
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50 $(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \ | |
51 $(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/m4/ax_openmp.m4 \ | |
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54 $(ACLOCAL_M4) | |
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57 CONFIG_CLEAN_FILES = | |
58 CONFIG_CLEAN_VPATH_FILES = | |
59 LTLIBRARIES = $(noinst_LTLIBRARIES) | |
60 libsquid_la_LIBADD = | |
61 am_libsquid_la_OBJECTS = a2m.lo aligneval.lo alignio.lo clustal.lo \ | |
62 cluster.lo dayhoff.lo eps.lo file.lo getopt.lo gki.lo gsi.lo \ | |
63 gsi64.lo hsregex.lo iupac.lo msa.lo msf.lo phylip.lo \ | |
64 revcomp.lo rk.lo selex.lo seqencode.lo shuffle.lo sqerror.lo \ | |
65 sqio.lo squidcore.lo sre_ctype.lo sre_math.lo sre_random.lo \ | |
66 sre_string.lo ssi.lo stack.lo stockholm.lo stopwatch.lo \ | |
67 translate.lo types.lo vectorops.lo weight.lo | |
68 libsquid_la_OBJECTS = $(am_libsquid_la_OBJECTS) | |
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70 depcomp = $(SHELL) $(top_srcdir)/depcomp | |
71 am__depfiles_maybe = depfiles | |
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73 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ | |
74 $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) | |
75 LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ | |
76 --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \ | |
77 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) | |
78 CCLD = $(CC) | |
79 LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ | |
80 --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \ | |
81 $(LDFLAGS) -o $@ | |
82 SOURCES = $(libsquid_la_SOURCES) | |
83 DIST_SOURCES = $(libsquid_la_SOURCES) | |
84 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; | |
85 am__vpath_adj = case $$p in \ | |
86 $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ | |
87 *) f=$$p;; \ | |
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89 am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`; | |
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93 am__nobase_strip = \ | |
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110 ACLOCAL = @ACLOCAL@ | |
111 AMTAR = @AMTAR@ | |
112 #LDADD = | |
113 | |
114 # need DCLUSTALO here to enable Clustal specific squid patches | |
115 # CLUSTALO is also defined in ../config.h which is included by squid.h | |
116 # but some files do not include squid.h | |
117 AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@ | |
118 AM_CXXFLAGS = @AM_CXXFLAGS@ | |
119 AM_LDFLAGS = @AM_LDFLAGS@ | |
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149 INSTALL_SCRIPT = @INSTALL_SCRIPT@ | |
150 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ | |
151 LD = @LD@ | |
152 LDFLAGS = @LDFLAGS@ | |
153 LIBOBJS = @LIBOBJS@ | |
154 LIBS = @LIBS@ | |
155 LIBTOOL = @LIBTOOL@ | |
156 LIPO = @LIPO@ | |
157 LN_S = @LN_S@ | |
158 LTLIBOBJS = @LTLIBOBJS@ | |
159 MAKEINFO = @MAKEINFO@ | |
160 MKDIR_P = @MKDIR_P@ | |
161 NM = @NM@ | |
162 NMEDIT = @NMEDIT@ | |
163 OBJDUMP = @OBJDUMP@ | |
164 OBJEXT = @OBJEXT@ | |
165 OPENMP_CFLAGS = @OPENMP_CFLAGS@ | |
166 OPENMP_CXXFLAGS = @OPENMP_CXXFLAGS@ | |
167 OTOOL = @OTOOL@ | |
168 OTOOL64 = @OTOOL64@ | |
169 PACKAGE = @PACKAGE@ | |
170 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ | |
171 PACKAGE_CODENAME = @PACKAGE_CODENAME@ | |
172 PACKAGE_NAME = @PACKAGE_NAME@ | |
173 PACKAGE_STRING = @PACKAGE_STRING@ | |
174 PACKAGE_TARNAME = @PACKAGE_TARNAME@ | |
175 PACKAGE_URL = @PACKAGE_URL@ | |
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185 abs_srcdir = @abs_srcdir@ | |
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202 builddir = @builddir@ | |
203 datadir = @datadir@ | |
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206 dvidir = @dvidir@ | |
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236 top_srcdir = @top_srcdir@ | |
237 | |
238 #SUBDIRS = | |
239 EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz | |
240 noinst_LTLIBRARIES = libsquid.la | |
241 libsquid_la_SOURCES = a2m.c aligneval.c alignio.c \ | |
242 clustal.c cluster.c \ | |
243 dayhoff.c \ | |
244 eps.c \ | |
245 file.c \ | |
246 getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \ | |
247 hsregex.c \ | |
248 iupac.c \ | |
249 msa.c msa.h msf.c \ | |
250 phylip.c \ | |
251 revcomp.c rk.c rk.h \ | |
252 selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \ | |
253 sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \ | |
254 ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \ | |
255 translate.c types.c vectorops.c \ | |
256 vectorops.h version.h \ | |
257 weight.c | |
258 | |
259 library_includedir = $(includedir)/clustalo/squid | |
260 library_include_HEADERS = gki.h gsi64.h msa.h rk.h \ | |
261 squid.h stopwatch.h sqfuncs.h \ | |
262 sre_random.h ssi.h stockholm.h \ | |
263 vectorops.h version.h | |
264 | |
265 all: all-am | |
266 | |
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299 | |
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313 | |
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403 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ | |
404 unique=`for i in $$list; do \ | |
405 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ | |
406 done | \ | |
407 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ | |
408 END { if (nonempty) { for (i in files) print i; }; }'`; \ | |
409 mkid -fID $$unique | |
410 tags: TAGS | |
411 | |
412 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ | |
413 $(TAGS_FILES) $(LISP) | |
414 set x; \ | |
415 here=`pwd`; \ | |
416 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ | |
417 unique=`for i in $$list; do \ | |
418 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ | |
419 done | \ | |
420 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ | |
421 END { if (nonempty) { for (i in files) print i; }; }'`; \ | |
422 shift; \ | |
423 if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ | |
424 test -n "$$unique" || unique=$$empty_fix; \ | |
425 if test $$# -gt 0; then \ | |
426 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ | |
427 "$$@" $$unique; \ | |
428 else \ | |
429 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ | |
430 $$unique; \ | |
431 fi; \ | |
432 fi | |
433 ctags: CTAGS | |
434 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ | |
435 $(TAGS_FILES) $(LISP) | |
436 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ | |
437 unique=`for i in $$list; do \ | |
438 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ | |
439 done | \ | |
440 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ | |
441 END { if (nonempty) { for (i in files) print i; }; }'`; \ | |
442 test -z "$(CTAGS_ARGS)$$unique" \ | |
443 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ | |
444 $$unique | |
445 | |
446 GTAGS: | |
447 here=`$(am__cd) $(top_builddir) && pwd` \ | |
448 && $(am__cd) $(top_srcdir) \ | |
449 && gtags -i $(GTAGS_ARGS) "$$here" | |
450 | |
451 distclean-tags: | |
452 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags | |
453 | |
454 distdir: $(DISTFILES) | |
455 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ | |
456 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ | |
457 list='$(DISTFILES)'; \ | |
458 dist_files=`for file in $$list; do echo $$file; done | \ | |
459 sed -e "s|^$$srcdirstrip/||;t" \ | |
460 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \ | |
461 case $$dist_files in \ | |
462 */*) $(MKDIR_P) `echo "$$dist_files" | \ | |
463 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \ | |
464 sort -u` ;; \ | |
465 esac; \ | |
466 for file in $$dist_files; do \ | |
467 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ | |
468 if test -d $$d/$$file; then \ | |
469 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ | |
470 if test -d "$(distdir)/$$file"; then \ | |
471 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ | |
472 fi; \ | |
473 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ | |
474 cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ | |
475 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ | |
476 fi; \ | |
477 cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ | |
478 else \ | |
479 test -f "$(distdir)/$$file" \ | |
480 || cp -p $$d/$$file "$(distdir)/$$file" \ | |
481 || exit 1; \ | |
482 fi; \ | |
483 done | |
484 check-am: all-am | |
485 check: check-am | |
486 all-am: Makefile $(LTLIBRARIES) $(HEADERS) | |
487 installdirs: | |
488 for dir in "$(DESTDIR)$(library_includedir)"; do \ | |
489 test -z "$$dir" || $(MKDIR_P) "$$dir"; \ | |
490 done | |
491 install: install-am | |
492 install-exec: install-exec-am | |
493 install-data: install-data-am | |
494 uninstall: uninstall-am | |
495 | |
496 install-am: all-am | |
497 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am | |
498 | |
499 installcheck: installcheck-am | |
500 install-strip: | |
501 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ | |
502 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ | |
503 `test -z '$(STRIP)' || \ | |
504 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install | |
505 mostlyclean-generic: | |
506 | |
507 clean-generic: | |
508 | |
509 distclean-generic: | |
510 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) | |
511 -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) | |
512 | |
513 maintainer-clean-generic: | |
514 @echo "This command is intended for maintainers to use" | |
515 @echo "it deletes files that may require special tools to rebuild." | |
516 clean: clean-am | |
517 | |
518 clean-am: clean-generic clean-libtool clean-noinstLTLIBRARIES \ | |
519 mostlyclean-am | |
520 | |
521 distclean: distclean-am | |
522 -rm -rf ./$(DEPDIR) | |
523 -rm -f Makefile | |
524 distclean-am: clean-am distclean-compile distclean-generic \ | |
525 distclean-tags | |
526 | |
527 dvi: dvi-am | |
528 | |
529 dvi-am: | |
530 | |
531 html: html-am | |
532 | |
533 html-am: | |
534 | |
535 info: info-am | |
536 | |
537 info-am: | |
538 | |
539 install-data-am: install-library_includeHEADERS | |
540 | |
541 install-dvi: install-dvi-am | |
542 | |
543 install-dvi-am: | |
544 | |
545 install-exec-am: | |
546 | |
547 install-html: install-html-am | |
548 | |
549 install-html-am: | |
550 | |
551 install-info: install-info-am | |
552 | |
553 install-info-am: | |
554 | |
555 install-man: | |
556 | |
557 install-pdf: install-pdf-am | |
558 | |
559 install-pdf-am: | |
560 | |
561 install-ps: install-ps-am | |
562 | |
563 install-ps-am: | |
564 | |
565 installcheck-am: | |
566 | |
567 maintainer-clean: maintainer-clean-am | |
568 -rm -rf ./$(DEPDIR) | |
569 -rm -f Makefile | |
570 maintainer-clean-am: distclean-am maintainer-clean-generic | |
571 | |
572 mostlyclean: mostlyclean-am | |
573 | |
574 mostlyclean-am: mostlyclean-compile mostlyclean-generic \ | |
575 mostlyclean-libtool | |
576 | |
577 pdf: pdf-am | |
578 | |
579 pdf-am: | |
580 | |
581 ps: ps-am | |
582 | |
583 ps-am: | |
584 | |
585 uninstall-am: uninstall-library_includeHEADERS | |
586 | |
587 .MAKE: install-am install-strip | |
588 | |
589 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \ | |
590 clean-libtool clean-noinstLTLIBRARIES ctags distclean \ | |
591 distclean-compile distclean-generic distclean-libtool \ | |
592 distclean-tags distdir dvi dvi-am html html-am info info-am \ | |
593 install install-am install-data install-data-am install-dvi \ | |
594 install-dvi-am install-exec install-exec-am install-html \ | |
595 install-html-am install-info install-info-am \ | |
596 install-library_includeHEADERS install-man install-pdf \ | |
597 install-pdf-am install-ps install-ps-am install-strip \ | |
598 installcheck installcheck-am installdirs maintainer-clean \ | |
599 maintainer-clean-generic mostlyclean mostlyclean-compile \ | |
600 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \ | |
601 tags uninstall uninstall-am uninstall-library_includeHEADERS | |
602 | |
603 | |
604 # Tell versions [3.59,3.63) of GNU make to not export all variables. | |
605 # Otherwise a system limit (for SysV at least) may be exceeded. | |
606 .NOEXPORT: |