Mercurial > repos > cmonjeau > lordec
changeset 5:86ac3b90e9f6 draft
Uploaded
| author | abretaud |
|---|---|
| date | Wed, 31 Aug 2016 11:22:34 -0400 |
| parents | f0b144292846 |
| children | d135caa42d04 |
| files | lordec_stat.xml |
| diffstat | 1 files changed, 9 insertions(+), 7 deletions(-) [+] |
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--- a/lordec_stat.xml Wed Aug 31 11:22:26 2016 -0400 +++ b/lordec_stat.xml Wed Aug 31 11:22:34 2016 -0400 @@ -1,9 +1,9 @@ -<tool id="lordecstat" name="lordecstat" version="0.5.3"> +<tool id="lordecstat" name="lordecstat" version="0.5.3.1"> <description>is an efficient tool to generate statistics on solid and weak k-mers in PacBio corrected reads</description> <requirements> - <requirement type="package" version="0.5.3">lordec</requirement> + <requirement type="package" version="0.6">lordec</requirement> </requirements> - <command> + <command><![CDATA[ lordec-stat -2 $short_reads -i $long_reads @@ -12,8 +12,9 @@ -S $stat_file #if str( $advanced_options.advanced_options_selector) == "advanced" -T $advanced_options.threads -#end if -2>1 +#end if +2>&1 +]]> </command> <inputs> @@ -56,7 +57,7 @@ **Integrated by** -Yvan Le Bras and Cyril Monjeaud +Yvan Le Bras and Cyril Monjeaud GenOuest Bio-informatics Core Facility @@ -70,6 +71,7 @@ </help> <citations> + <citation type="doi">10.1186/s13742-015-0105-2</citation> <citation type="doi">10.1093/bioinformatics/btu538</citation> <citation type="bibtex">@INPROCEEDINGS{JOBIM2013, author = {Le Bras, Y. and ROULT, A. and Monjeaud, C. and Bahin, M. and Quenez, O. and Heriveau, C. and Bretaudeau, A. and Sallou, O. and Collin, O.}, @@ -79,5 +81,5 @@ url = {https://www.e-biogenouest.org/resources/128}, pages = {97-106} }</citation> -</citations> +</citations> </tool>