Mercurial > repos > cmonjeau > mapsembler2
comparison mapsembler2.py @ 3:c62c5fd56ebf default tip
fix missing option
| author | cmonjeau |
|---|---|
| date | Fri, 11 Sep 2015 10:11:09 +0000 |
| parents | 5aea5b993ae8 |
| children |
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| 2:5aea5b993ae8 | 3:c62c5fd56ebf |
|---|---|
| 21 | 21 |
| 22 # arguments recuperation | 22 # arguments recuperation |
| 23 parser = optparse.OptionParser() | 23 parser = optparse.OptionParser() |
| 24 parser.add_option("-s", dest="input_starters") | 24 parser.add_option("-s", dest="input_starters") |
| 25 parser.add_option("-r", dest="input_files") | 25 parser.add_option("-r", dest="input_files") |
| 26 parser.add_option("-e", dest="extension_format") | |
| 26 parser.add_option("-t", dest="output_extension") | 27 parser.add_option("-t", dest="output_extension") |
| 27 parser.add_option("-k", dest="kmer") | 28 parser.add_option("-k", dest="kmer") |
| 28 parser.add_option("-c", dest="coverage") | 29 parser.add_option("-c", dest="coverage") |
| 29 parser.add_option("-d", dest="substitutions") | 30 parser.add_option("-d", dest="substitutions") |
| 30 parser.add_option("-g", dest="genome_size") | 31 parser.add_option("-g", dest="genome_size") |