diff tool_dependencies.xml @ 0:018b5bfbaa97 draft default tip

Imported from capsule None

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 05 11:41:06 2015 -0400
@@ -0,0 +1,45 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="discoSnp_plus_plus" version="2.1.7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://gatb-tools.gforge.inria.fr/versions/src/DiscoSNP++-2.1.7-Source.tar.gz</action>
+                <action type="shell_command">/bin/bash compile_discoSnp++.sh</action>
+
+	<!-- move directories into $INSTALL_DIR -->
+        <action type="move_directory_files">
+    		    <source_directory>build</source_directory>
+                    <destination_directory>$INSTALL_DIR/build</destination_directory>
+	</action>
+	<action type="move_directory_files">
+		    <source_directory>tools</source_directory>
+		    <destination_directory>$INSTALL_DIR/tools</destination_directory>
+	</action>
+
+	<!-- move files into $INSTALL_DIR -->
+	<action type="move_file">
+		 <source>run_discoSnp++.sh</source>
+		 <destination>$INSTALL_DIR</destination>
+	</action>
+
+	<action type="move_file">
+		<source>run_VCF_creator.sh</source>
+		<destination>$INSTALL_DIR</destination>
+	</action>
+
+	<action type="chmod">
+	 	<file mode="755">$INSTALL_DIR/run_VCF_creator.sh</file>
+	</action>
+
+
+		<!-- create env.sh -->
+                <action type="set_environment">
+                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>                
+            </actions>
+        </install>
+        <readme>
+            This package installs discoSNP++ from the sources availbale in the Colib'reads web site.
+        </readme>
+    </package>
+</tool_dependency>