comparison STACKS_procrad.xml @ 2:c9e10e0d6c10

fix discard file

1:ccfa8e539bdf

    #end if
    --outype $outype
    --qualitenc $options_quality.qualitenc
    #if $capture:
        -D
    #end if
    --activate_advanced_options $activate_advanced_options
    -t $options_advanced.truncate
    #if $options_advanced.discard:
        -q

	<filter>options_output_infos_selector != "1"</filter>
    </data>
    <data format="fastq" name="discard_file" label="discard.fastq with ${tool.name} on ${on_string}: demultiplexed and cleaned reads ">
	<filter>capture</filter>
    </data>


</outputs>

<stdio>
   <exit_code range="1" level="fatal" description="Error in Stacks Process radtag execution" />
</stdio>

2:c9e10e0d6c10

    #end if
    --outype $outype
    --qualitenc $options_quality.qualitenc
    #if $capture:
        -D
        --discard_file $discard_file
    #end if
    --activate_advanced_options $activate_advanced_options
    -t $options_advanced.truncate
    #if $options_advanced.discard:
        -q

	<filter>options_output_infos_selector != "1"</filter>
    </data>
    <data format="fastq" name="discard_file" label="discard.fastq with ${tool.name} on ${on_string}: demultiplexed and cleaned reads ">
	<filter>capture</filter>
    </data>
</outputs>

<stdio>
   <exit_code range="1" level="fatal" description="Error in Stacks Process radtag execution" />
</stdio>