Mercurial > repos > cmonjeau > stacks

diff STACKS_procrad.xml @ 2:c9e10e0d6c10

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fix discard file
author cmonjeau
date Mon, 24 Aug 2015 15:39:12 +0000
parents d6ba40f6c824
children 0e0ff9e9c761
line wrap: on
line diff
--- a/STACKS_procrad.xml	Mon Aug 24 10:09:14 2015 +0000
+++ b/STACKS_procrad.xml	Mon Aug 24 15:39:12 2015 +0000
@@ -53,6 +53,7 @@
     --qualitenc $options_quality.qualitenc
     #if $capture:
         -D
+        --discard_file $discard_file
     #end if
     --activate_advanced_options $activate_advanced_options
     -t $options_advanced.truncate
@@ -244,8 +245,6 @@
     <data format="fastq" name="discard_file" label="discard.fastq with ${tool.name} on ${on_string}: demultiplexed and cleaned reads ">
 	<filter>capture</filter>
     </data>
-
-
 </outputs>
 
 <stdio>