Mercurial > repos > computational-metabolomics > dimspy_align_samples
comparison README.rst @ 1:c72868b80c29 draft
"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 680116d0cf6a6d7246cba655452dea43269aeba4"
| author | computational-metabolomics |
|---|---|
| date | Tue, 28 Apr 2020 17:44:59 -0400 |
| parents | 33b65dacd377 |
| children | 7b6f148bd99f |
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| 0:33b65dacd377 | 1:c72868b80c29 |
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| 1 Galaxy tool wrappers for DIMSpy | 1 Galaxy tool wrappers for DIMSpy |
| 2 ======================== | 2 =============================== |
| 3 |Build Status (Travis)| |Git| |Bioconda| |License| | 3 |Build Status (Travis)| |galaxy-eu| |Git| |Bioconda| |License| |
| 4 | 4 |
| 5 Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data | 5 Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data |
| 6 | 6 |
| 7 Source code: https://github.com/computational-metabolomics/dimspy | 7 Source code: https://github.com/computational-metabolomics/dimspy |
| 8 | 8 |
| 9 PyPI (The Python Package Index): https://pypi.org/project/dimspy | 9 PyPI (The Python Package Index): https://pypi.org/project/dimspy |
| 10 | 10 |
| 11 | 11 |
| 12 Version | 12 Version |
| 13 -------- | 13 -------- |
| 14 v1.4.0+Galaxy0 (`DIMSpy v1.4.0 <https://pypi.org/project/dimspy/1.4.0/>`_) | 14 v2.0.0+Galaxy0 (`DIMSpy v2.0.0 <https://pypi.org/project/dimspy/2.0.0/>`_) |
| 15 | 15 |
| 16 | 16 |
| 17 Galaxy | 17 Galaxy |
| 18 ------- | 18 ------- |
| 19 `Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. | 19 `Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. |
| 20 | 20 |
| 21 | 21 |
| 22 Authors, contributors & Contacts | 22 Credits |
| 23 ---------------------------------- | 23 ------- |
| 24 - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ | 24 |
| 25 - Thomas N. Lawson (tnl495@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ | 25 **Authors and contributors** |
| 26 - Martin R. Jones (m.r.jones.1@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ | 26 - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <https://www.birmingham.ac.uk/staff/profiles/biosciences/weber-ralf.aspx>`__ |
| 27 - Thomas N. Lawson (t.n.lawson@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`__ | |
| 28 - Martin R. Jones (martin.jones@eawag.ch) - `Eawag (Switzerland) <https://www.eawag.ch/en/aboutus/portrait/organisation/staff/profile/martin-jones/show/>`_ | |
| 29 | |
| 30 | |
| 31 **DIMSpy acknowledges support from the following funders:** | |
| 32 - BBSRC, grant number BB/M019985/1 | |
| 33 - European Commission's H2020 programme, grant agreement number 654241 | |
| 34 - Wellcome Trust, grant number 202952/Z/16/Z | |
| 27 | 35 |
| 28 | 36 |
| 29 Bugs | 37 Bugs |
| 30 ---- | 38 ---- |
| 31 Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_. | 39 Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_. |
| 34 will help you to make the PR if you are new to `git`. | 42 will help you to make the PR if you are new to `git`. |
| 35 | 43 |
| 36 | 44 |
| 37 Changes | 45 Changes |
| 38 ------- | 46 ------- |
| 47 v2.0.0+galaxy0 | |
| 48 - First release (Python 3-based version `DIMSpy <https://pypi.org/project/dimspy/2.0.0/>`_) | |
| 49 | |
| 39 v1.4.0+galaxy0 | 50 v1.4.0+galaxy0 |
| 40 - First stable release | |
| 41 - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_) | 51 - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_) |
| 42 | 52 |
| 43 | 53 |
| 44 Licenses | 54 Licenses |
| 45 ------- | 55 ------- |
| 57 :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy | 67 :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy |
| 58 | 68 |
| 59 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 | 69 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 |
| 60 :target: https://github.com/computational-metabolomics/dimspy | 70 :target: https://github.com/computational-metabolomics/dimspy |
| 61 | 71 |
| 72 .. |galaxy-eu| image:: https://img.shields.io/badge/usegalaxy-.eu-brightgreen?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABgAAAASCAYAAABB7B6eAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAACXBIWXMAAAsTAAALEwEAmpwYAAACC2lUWHRYTUw6Y29tLmFkb2JlLnhtcAAAAAAAPHg6eG1wbWV0YSB4bWxuczp4PSJhZG9iZTpuczptZXRhLyIgeDp4bXB0az0iWE1QIENvcmUgNS40LjAiPgogICA8cmRmOlJERiB4bWxuczpyZGY9Imh0dHA6Ly93d3cudzMub3JnLzE5OTkvMDIvMjItcmRmLXN5bnRheC1ucyMiPgogICAgICA8cmRmOkRlc2NyaXB0aW9uIHJkZjphYm91dD0iIgogICAgICAgICAgICB4bWxuczp0aWZmPSJodHRwOi8vbnMuYWRvYmUuY29tL3RpZmYvMS4wLyI+CiAgICAgICAgIDx0aWZmOlJlc29sdXRpb25Vbml0PjI8L3RpZmY6UmVzb2x1dGlvblVuaXQ+CiAgICAgICAgIDx0aWZmOkNvbXByZXNzaW9uPjE8L3RpZmY6Q29tcHJlc3Npb24+CiAgICAgICAgIDx0aWZmOk9yaWVudGF0aW9uPjE8L3RpZmY6T3JpZW50YXRpb24+CiAgICAgICAgIDx0aWZmOlBob3RvbWV0cmljSW50ZXJwcmV0YXRpb24+MjwvdGlmZjpQaG90b21ldHJpY0ludGVycHJldGF0aW9uPgogICAgICA8L3JkZjpEZXNjcmlwdGlvbj4KICAgPC9yZGY6UkRGPgo8L3g6eG1wbWV0YT4KD0UqkwAAAn9JREFUOBGlVEuLE0EQruqZiftwDz4QYT1IYM8eFkHFw/4HYX+GB3/B4l/YP+CP8OBNTwpCwFMQXAQPKtnsg5nJZpKdni6/6kzHvAYDFtRUT71f3UwAEbkLch9ogQxcBwRKMfAnM1/CBwgrbxkgPAYqlBOy1jfovlaPsEiWPROZmqmZKKzOYCJb/AbdYLso9/9B6GppBRqCrjSYYaquZq20EUKAzVpjo1FzWRDVrNay6C/HDxT92wXrAVCH3ASqq5VqEtv1WZ13Mdwf8LFyyKECNbgHHAObWhScf4Wnj9CbQpPzWYU3UFoX3qkhlG8AY2BTQt5/EA7qaEPQsgGLWied0A8VKrHAsCC1eJ6EFoUd1v6GoPOaRAtDPViUr/wPzkIFV9AaAZGtYB568VyJfijV+ZBzlVZJ3W7XHB2RESGe4opXIGzRTdjcAupOK09RA6kzr1NTrTj7V1ugM4VgPGWEw+e39CxO6JUw5XhhKihmaDacU2GiR0Ohcc4cZ+Kq3AjlEnEeRSazLs6/9b/kh4eTC+hngE3QQD7Yyclxsrf3cpxsPXn+cFdenF9aqlBXMXaDiEyfyfawBz2RqC/O9WF1ysacOpytlUSoqNrtfbS642+4D4CS9V3xb4u8P/ACI4O810efRu6KsC0QnjHJGaq4IOGUjWTo/YDZDB3xSIxcGyNlWcTucb4T3in/3IaueNrZyX0lGOrWndstOr+w21UlVFokILjJLFhPukbVY8OmwNQ3nZgNJNmKDccusSb4UIe+gtkI+9/bSLJDjqn763f5CQ5TLApmICkqwR0QnUPKZFIUnoozWcQuRbC0Km02knj0tPYx63furGs3x/iPnz83zJDVNtdP3QAAAABJRU5ErkJggg== | |
| 73 :target: http://usegalaxy.eu | |
| 74 | |
| 62 .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 | 75 .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 |
| 63 :target: http://bioconda.github.io/recipes/dimspy/README.html | 76 :target: http://bioconda.github.io/recipes/dimspy/README.html |
| 64 | 77 |
| 65 .. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg | 78 .. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg |
| 66 :target: https://www.gnu.org/licenses/gpl-3.0.html | 79 :target: https://www.gnu.org/licenses/gpl-3.0.html |