Mercurial > repos > computational-metabolomics > mspurity_combineannotations
comparison spectralMatching.R @ 4:20768ba7f0b4 draft
"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit cbbd708ea1e93b1b1643f6bf6da72af65ffd9950"
| author | computational-metabolomics |
|---|---|
| date | Mon, 10 Aug 2020 08:36:22 -0400 |
| parents | 7f3183988100 |
| children | 18c0038dde9c |
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| 3:b800001c9f30 | 4:20768ba7f0b4 |
|---|---|
| 290 } | 290 } |
| 291 | 291 |
| 292 q_check <- checkSPeakMeta(opt$q_dbPth, 'query') | 292 q_check <- checkSPeakMeta(opt$q_dbPth, 'query') |
| 293 l_check <- checkSPeakMeta(opt$l_dbPth, 'library') | 293 l_check <- checkSPeakMeta(opt$l_dbPth, 'library') |
| 294 | 294 |
| 295 | |
| 295 if (q_check && l_check){ | 296 if (q_check && l_check){ |
| 296 sm <- msPurity::spectralMatching( | 297 sm <- msPurity::spectralMatching( |
| 297 q_purity = opt$q_purity, | 298 q_purity = opt$q_purity, |
| 298 l_purity = opt$l_purity, | 299 l_purity = opt$l_purity, |
| 299 | 300 |