Mercurial > repos > computational-metabolomics > mspurity_combineannotations
comparison combineAnnotations.xml @ 8:94a2b6571758 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 7e1748612a9f9dce11a9e54ff36752b600e7aea3
| author | computational-metabolomics |
|---|---|
| date | Wed, 12 Jun 2024 16:06:42 +0000 |
| parents | d4376a743f7b |
| children |
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| 7:d7104112fac6 | 8:94a2b6571758 |
|---|---|
| 111 </outputs> | 111 </outputs> |
| 112 <tests> | 112 <tests> |
| 113 <test> | 113 <test> |
| 114 <param name="sm_resultPth" value="combinedAnnotation_input_spectralMatching.sqlite" /> | 114 <param name="sm_resultPth" value="combinedAnnotation_input_spectralMatching.sqlite" /> |
| 115 <param name="metfrag_resultPth" value="combineAnnotations_input_metfrag.tsv" /> | 115 <param name="metfrag_resultPth" value="combineAnnotations_input_metfrag.tsv" /> |
| 116 <param name="sirius_csi_resultPth" value="combineAnnotations_input_sirus_csifingerid.tsv" /> | 116 <param name="sirius_csi_resultPth" value="combineAnnotations_input_sirus_csifingerid.tsv" /> |
| 117 <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> | 117 <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> |
| 118 <param name="beams_resultPth" value="combineAnnotations_input_beams.tsv" /> | 118 <param name="ms1_lookup_resultPth" value="combineAnnotations_input_beams.tsv" /> |
| 119 <param name="ms1_lookup_keepAdducts" value="[M+H]+, [M+Na]+" /> | |
| 119 <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> | 120 <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> |
| 120 <output name="combined_annotations_tsv" file="combineAnnotations_combined_annotations.tsv" ftype="tsv" /> | 121 <output name="combined_annotations_tsv" file="combineAnnotations_combined_annotations.tsv" ftype="tsv" /> |
| 121 <output name="combined_annotations_sqlite" file="combineAnnotations_combined_annotations.sqlite" ftype="sqlite" compare="sim_size"/> | 122 <output name="combined_annotations_sqlite" file="combineAnnotations_combined_annotations.sqlite" ftype="sqlite" compare="sim_size"/> |
| 122 </test> | 123 </test> |
| 123 </tests> | 124 </tests> |