comparison macros.xml @ 7:0cc6b67dccb8 draft

"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"

6:2f71b3495221

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">1.16.2</token>
    <token name="@GALAXY_TOOL_VERSION@">0</token>

    <xml name="requirements">
        <requirements>
           <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement>
           <requirement type="package" version="1.46.0" >bioconductor-camera</requirement>

                        <option value="ESI-TOF" selected="true" >ESI-TOF</option>
                        <option value="FAB-B">FAB-B</option>
                        <option value="FAB-BE">FAB-BE</option>
                        <option value="FAB-EB">FAB-EB</option>
                        <option value="FAB-EBEB">FAB-EBEB</option>
                        <option value="FAB-EBEB">FD-B</option>
                        <option value="FI-B">FI-B</option>
                        <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option>
                        <option value="GC-EI-Q">GC-EI-Q</option>
                        <option value="GC-EI-QQ">GC-EI-QQ</option>
                        <option value="GC-EI-TOF">GC-EI-TOF</option>

            <conditional name="@QL_SHRT@_spectraTypes_cond">
                <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?"
                help="" />
                <when value="true">
                    <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true"  label="Spectra type" >
                        <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option>
                        <option value="inter">Averaged inter spectra</option>
                        <option value="intra">Averaged intra spectra </option>
                        <option value="scans">All individual scans</option>
                        <option value="NA">Not applicable/defined</option>
                    </param>
                </when>
                <when value="false">
                </when>

7:0cc6b67dccb8

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">1.16.2</token>
    <token name="@GALAXY_TOOL_VERSION@">1</token>

    <xml name="requirements">
        <requirements>
           <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement>
           <requirement type="package" version="1.46.0" >bioconductor-camera</requirement>

                        <option value="ESI-TOF" selected="true" >ESI-TOF</option>
                        <option value="FAB-B">FAB-B</option>
                        <option value="FAB-BE">FAB-BE</option>
                        <option value="FAB-EB">FAB-EB</option>
                        <option value="FAB-EBEB">FAB-EBEB</option>
                        <option value="FD-B">FD-B</option>
                        <option value="FI-B">FI-B</option>
                        <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option>
                        <option value="GC-EI-Q">GC-EI-Q</option>
                        <option value="GC-EI-QQ">GC-EI-QQ</option>
                        <option value="GC-EI-TOF">GC-EI-TOF</option>

            <conditional name="@QL_SHRT@_spectraTypes_cond">
                <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?"
                help="Note that when using 'scan' spectra types the spectraFilter option may need to be FALSE 
		      if 'allfrag' was not selecting when performing filterFragSpectra or if no filtering was performed at all" />
                <when value="true">
                    <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true"  label="Spectra type" >
                        <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option>
                        <option value="inter">Averaged inter spectra</option>
                        <option value="intra">Averaged intra spectra </option>
                        <option value="scan">All individual scans (may need to set spectraFilter to false with this option)</option>
                        <option value="NA">Not applicable/defined</option>
                    </param>
                </when>
                <when value="false">
                </when>