diff macros.xml @ 6:d25273689e04 draft

"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2579c8746819670348c378f86116f83703c493eb"

--- a/macros.xml	Fri Nov 13 10:10:53 2020 +0000
+++ b/macros.xml	Thu Mar 04 12:31:13 2021 +0000
@@ -1,17 +1,17 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">1.12.2</token>
-    <token name="@GALAXY_TOOL_VERSION@">3</token>
+    <token name="@TOOL_VERSION@">1.16.2</token>
+    <token name="@GALAXY_TOOL_VERSION@">0</token>
 
     <xml name="requirements">
         <requirements>
            <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement>
-           <requirement type="package" version="1.42.0" >bioconductor-camera</requirement>
-           <requirement type="package" version="3.8.0" >bioconductor-xcms</requirement>
-           <requirement type="package" version="1.14.0" >bioconductor-mspuritydata</requirement>
-           <requirement type="package" version="1.6.4">r-optparse</requirement>
-           <requirement type="package" version="1.1.1">r-rpostgres</requirement>
-           <requirement type="package" version="0.10.17">r-rmysql</requirement>
+           <requirement type="package" version="1.46.0" >bioconductor-camera</requirement>
+           <requirement type="package" version="3.12.0" >bioconductor-xcms</requirement>
+           <requirement type="package" version="1.16.0" >bioconductor-mspuritydata</requirement>
+           <requirement type="package" version="1.6.6">r-optparse</requirement>
+           <requirement type="package" version="1.3.1">r-rpostgres</requirement>
+           <requirement type="package" version="0.10.21">r-rmysql</requirement>
             <yield />
         </requirements>
     </xml>
@@ -23,13 +23,13 @@
     <xml name="offsets">
         <param argument="--minoffset" type="float" label="minoffset" value="0.5"
                help="Offset to the 'left' for the precursor range e.g. if precursor of interest is
-               100.0 then the range would be from 999.5 to 100.0"/>
+               100.0 then the range would be from 99.5 to 100.0"/>
         <param argument="--maxoffset" type="float" label="maxoffset" value="0.5"
                help="Offset to the 'right' for the precursor range  e.g. if precursor of interest is
                100.0 then the range would be from 100.0 to 100.5"/>
     </xml>
     <xml name="general_params">
-        <param argument="--ilim" type="float" value="0.05" 
+        <param argument="--ilim" type="float" value="0.05"
                label="Threshold to remove peaks below x % of the relative intensity of
                precursor of interest"
                help="All peaks less than this percentage of the precursor ion of interest will be
@@ -337,8 +337,8 @@
                 <when value="true">
                     <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true"  label="Spectra type" >
                         <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option>
-                        <option value="av_inter">Averaged inter spectra</option>
-                        <option value="av_intra">Averaged intra spectra </option>
+                        <option value="inter">Averaged inter spectra</option>
+                        <option value="intra">Averaged intra spectra </option>
                         <option value="scans">All individual scans</option>
                         <option value="NA">Not applicable/defined</option>
                     </param>