Mercurial > repos > computational-metabolomics > mspurity_spectralmatching
diff spectralMatching.xml @ 6:fecfe8c80e25 draft
"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2579c8746819670348c378f86116f83703c493eb"
| author | computational-metabolomics |
|---|---|
| date | Thu, 04 Mar 2021 12:32:11 +0000 |
| parents | aee10d29e82c |
| children |
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--- a/spectralMatching.xml Fri Nov 13 10:02:32 2020 +0000 +++ b/spectralMatching.xml Thu Mar 04 12:32:11 2021 +0000 @@ -221,6 +221,8 @@ <tests> <test> <param name="q_dbPth" value="createDatabase_output.sqlite" /> + <param name="q_spectraTypes_bool" value="true" /> + <param name="q_spectraTypes" value="inter,av_all" /> <param name="l_dbPth_select" value="userdb" /> <param name="l_dbPth" value="PR100037.sqlite" /> <param name="q_xcmsGroups_bool" value="true" /> @@ -234,6 +236,8 @@ <test> <param name="l_instrumentTypes_bool" value="true" /> <param name="q_dbPth" value="createDatabase_output.sqlite" /> + <param name="q_spectraTypes_bool" value="true" /> + <param name="q_spectraTypes" value="inter,av_all" /> <param name="l_dbPth_select" value="userdb" /> <param name="l_dbPth" value="PR100037.sqlite" /> <param name="q_xcmsGroups_bool" value="true" /> @@ -360,10 +364,10 @@ for all MS/MS spectra irrespective of if they are linked to XCMS MS1 features. -.. _spectral_database_schema: https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-datatabase-schema.html +.. _spectral_database_schema: https://www.bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-database-vignette.html .. _larger_database: https://github.com/computational-metabolomics/msp2db/releases .. _msp2db: https://github.com/computational-metabolomics/msp2db/releases -.. _msPurity_spectral_matching_vignette: https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.html +.. _msPurity_spectral_matching_vignette: https://www.bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.html ]]></help>