# HG changeset patch
# User computational-metabolomics
# Date 1644509147 0
# Node ID e29e64ff50bbb086cdabf7e27d1101adfbbea417
# Parent  96b07722120178490ef3b643297e040a29151377
"planemo upload for repository https://github.com/computational-metabolomics/sirius_csifingerid_galaxy commit a2dd58962ce65259d79c7647efef1f0b18dce48c"

diff -r 96b077221201 -r e29e64ff50bb sirius_csifingerid.py
--- a/sirius_csifingerid.py	Fri Feb 04 17:13:46 2022 +0000
+++ b/sirius_csifingerid.py	Thu Feb 10 16:05:47 2022 +0000
@@ -29,8 +29,6 @@
 parser.add_argument('--min_MSMS_peaks', default=1)
 parser.add_argument('--rank_filter', default=0)
 parser.add_argument('--confidence_filter', default=0)
-parser.add_argument('--backwards_compatible',
-                    default=False, action='store_true')
 parser.add_argument('--schema', default='msp')
 parser.add_argument('-a', '--adducts', action='append', nargs=1,
                     required=False, default=[], help='Adducts used')
@@ -350,7 +348,7 @@
 # before we start merging the files outfiles = [os.path.join(wd, f) for f in
 # glob.glob(os.path.join(wd, "*_metfrag_result.csv"))]
 def concat_output(filename, result_pth,
-                  rank_filter, confidence_filter, backwards_compatible):
+                  rank_filter, confidence_filter):
     outfiles = glob.glob(os.path.join(wd, '*', '*{}'.format(filename)))
 
     # sort files nicely