Mercurial > repos > computationaltranscriptomics > glassgo
comparison glassgo_wrapper.xml @ 24:74d04a19fdd7 draft
Uploaded
| author | computationaltranscriptomics |
|---|---|
| date | Tue, 31 Mar 2020 13:07:35 -0400 |
| parents | 76b7a84ba942 |
| children | 2e27fdf82795 |
comparison
equal
deleted
inserted
replaced
| 23:6af9965ab41c | 24:74d04a19fdd7 |
|---|---|
| 11 -i ${input_data.input} | 11 -i ${input_data.input} |
| 12 -d ${input_data.database} | 12 -d ${input_data.database} |
| 13 #if str($search.cond_param_setup.param_setup) == "manual": | 13 #if str($search.cond_param_setup.param_setup) == "manual": |
| 14 -e ${search.cond_param_setup.evalue} | 14 -e ${search.cond_param_setup.evalue} |
| 15 -p ${search.cond_param_setup.identity} | 15 -p ${search.cond_param_setup.identity} |
| 16 #if str($search.cond_param_setup.cond_clust_setup.clust_setup) == "off": | |
| 17 -l 0 | |
| 18 #else: | |
| 19 -l 2 | |
| 20 #if str($search.cond_param_setup.cond_clust_setup.clustering.conditional_filtering_setup.filtering_setup) == "manual": | |
| 21 -a ${search.cond_param_setup.cond_clust_setup.clustering.conditional_filtering_setup.filtering} | |
| 22 #else: | |
| 23 -a -1 | |
| 24 #end if | |
| 25 #end if | |
| 16 #end if | 26 #end if |
| 17 -u ${additional_setting.upstream_region} | 27 -u ${additional_setting.upstream_region} |
| 18 #if str($search.acclist) != "global": | 28 #if str($search.acclist) != "global": |
| 19 -g ${search.acclist} | 29 -g ${search.acclist} |
| 20 #end if | 30 #end if |
| 48 <param name="evalue" type="float" value="1.0" label="Maximum allowed E-Value" /> | 58 <param name="evalue" type="float" value="1.0" label="Maximum allowed E-Value" /> |
| 49 <param name="identity" type="integer" value="52" label="Minimum allowed identity [%]" /> | 59 <param name="identity" type="integer" value="52" label="Minimum allowed identity [%]" /> |
| 50 <conditional name="cond_clust_setup"> | 60 <conditional name="cond_clust_setup"> |
| 51 <param name="clust_setup" type="select" display="radio" label="Structure-based clustering"> | 61 <param name="clust_setup" type="select" display="radio" label="Structure-based clustering"> |
| 52 <option value="off">off</option> | 62 <option value="off">off</option> |
| 53 <option value="on">on</option> | 63 <option value="on" selected="true">on</option> |
| 54 </param> | 64 </param> |
| 55 <when value="on"> | 65 <when value="on"> |
| 56 <section name="clustering" title="Structure-based Clustering" expanded="true"> | 66 <section name="clustering" title="Structure-based Clustering" expanded="true"> |
| 57 <conditional name="conditional_filtering_setup"> | 67 <conditional name="conditional_filtering_setup"> |
| 58 <param name="filtering_setup" type="select" display="radio" label="Structure-based filtering"> | 68 <param name="filtering_setup" type="select" display="radio" label="Structure-based filtering"> |