# HG changeset patch # User computationaltranscriptomics # Date 1585674455 14400 # Node ID 74d04a19fdd780ab2b3f0516ef3397e3041c04ef # Parent 6af9965ab41cf732989eb01aa5a87f1fa98c2511 Uploaded diff -r 6af9965ab41c -r 74d04a19fdd7 glassgo_wrapper.xml --- a/glassgo_wrapper.xml Thu Mar 26 08:58:07 2020 -0400 +++ b/glassgo_wrapper.xml Tue Mar 31 13:07:35 2020 -0400 @@ -13,6 +13,16 @@ #if str($search.cond_param_setup.param_setup) == "manual": -e ${search.cond_param_setup.evalue} -p ${search.cond_param_setup.identity} + #if str($search.cond_param_setup.cond_clust_setup.clust_setup) == "off": + -l 0 + #else: + -l 2 + #if str($search.cond_param_setup.cond_clust_setup.clustering.conditional_filtering_setup.filtering_setup) == "manual": + -a ${search.cond_param_setup.cond_clust_setup.clustering.conditional_filtering_setup.filtering} + #else: + -a -1 + #end if + #end if #end if -u ${additional_setting.upstream_region} #if str($search.acclist) != "global": @@ -50,7 +60,7 @@ - +