Mercurial > repos > computationaltranscriptomics > vgx_converter

comparison vgx_converter.py @ 9:26655854fac5 draft

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author computationaltranscriptomics
date Fri, 13 May 2016 02:40:31 -0400
parents 1ae351222569
children 0726953d86f3
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8:1ae351222569 9:26655854fac5
32 p2 = shlex.split(row[2])[0] 32 p2 = shlex.split(row[2])[0]
33 33
34 if p1 not in ids: 34 if p1 not in ids:
35 ids[p1] = idc 35 ids[p1] = idc
36 idc = idc + 1 36 idc = idc + 1
37 nodes.append({'id': ids[p1], 'name': p1 }) 37 nodes.append({'id': str(ids[p1]), 'label': p1 })
38 if p2 not in ids: 38 if p2 not in ids:
39 ids[p2] = idc 39 ids[p2] = idc
40 idc = idc + 1 40 idc = idc + 1
41 nodes.append({'id': ids[p2], 'name': p2 }) 41 nodes.append({'id': str(ids[p2]), 'label': p2 })
42 42
43 links.append({'source': ids[p1], 'target': ids[p2]}) 43 links.append({'source': ids[p1], 'target': ids[p2]})
44 f.close() 44 f.close()
45 45
46 data = { 'graph': {'nodes': nodes, 'edges': links}} 46 data = { 'graph': {'nodes': nodes, 'edges': links}}