Mercurial > repos > computationaltranscriptomics > vgx_converter
comparison vgx_converter.xml @ 15:cb4dce1042ef draft
Changed VGX to JGF
author | computationaltranscriptomics |
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date | Thu, 02 Jun 2016 09:32:40 -0400 |
parents | 75763eea6d2b |
children | 567274fa974d |
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14:0726953d86f3 | 15:cb4dce1042ef |
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1 <tool id="vgx_converter" name="SIF-to-VGX" version="0.0.3"> | 1 <tool id="vgx_converter" name="SIF-to-JGF" version="0.0.4"> |
2 <description>Converts a SIF file to a JSON file in node-link format for visualization in VisualGraphX</description> | 2 <description>Converts a SIF file to a JSON Graph Format (JGF) file for visualization in VisualGraphX</description> |
3 <command interpreter="python">vgx_converter.py $input1 $delimiter $input2 $output</command> | 3 <command interpreter="python">vgx_converter.py $input1 $delimiter $input2 $output</command> |
4 <inputs> | 4 <inputs> |
5 <param format="txt" name="input1" type="data" label="Network"/> | 5 <param format="txt" name="input1" type="data" label="Network"/> |
6 <param format="tabular" name="input2" type="data" optional="true" label="Attributes"/> | 6 <param format="tabular" name="input2" type="data" optional="true" label="Attributes"/> |
7 <param name="delimiter" type="select" label="Delimiter"> | 7 <param name="delimiter" type="select" label="Delimiter"> |
8 <option value="tab" selected="true">tab-delimited</option> | 8 <option value="tab" selected="true">tab-delimited</option> |
9 <option value="space">space-delimited</option> | 9 <option value="space">space-delimited</option> |
10 </param> | 10 </param> |
11 </inputs> | 11 </inputs> |
12 <outputs> | 12 <outputs> |
13 <data format="json" name="output"/> | 13 <data format="jgf" name="output"/> |
14 </outputs> | 14 </outputs> |
15 | 15 |
16 <help> | 16 <help> |
17 This tool converts the simple interaction format (.sif) to the JavaScript Object Notation (.json) | 17 This tool converts the simple interaction format (.sif) to the JavaScript Graph Format JGF (.jgf) |
18 that can be visualized using VisualGraphX. Furthermore, a attributes list can be provided to enhance | 18 that can be visualized using VisualGraphX. Furthermore, a attributes list can be provided to enhance |
19 the information of the nodes in the graph. | 19 the information of the nodes in the graph. |
20 </help> | 20 </help> |
21 | 21 |
22 <tests> | 22 <tests> |