# HG changeset patch
# User computationaltranscriptomics
# Date 1462922454 14400
# Node ID 006d305482370f0341e0e2043e68ae747994bf64
# Parent  eb471a967693811311f3d6f01c3ac8593a0da25c
Deleted selected files

diff -r eb471a967693 -r 006d30548237 vgx_converter.py
--- a/vgx_converter.py	Tue Feb 23 09:18:55 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,71 +0,0 @@
-#!/usr/bin/python
-
-import sys # 
-import csv
-import json
-import shlex
-
-
-def __main__():
-
-    arg_names = ['command', "network", "delimiter", "attributes", "output"]
-    args = dict(zip(arg_names, sys.argv))
-    print args
-
-    idc = 0 # counter for the ids
-    ids = {} # dictionary with id and name correlation
-    keys = []
-
-    nodes = []
-    links = []
-
-    delim = {}
-    delim['tab'] = '\t'
-    delim['space'] = ' '
-
-
-    #################################################
-    data = {}
-    with open(sys.argv[1], 'r') as f:
-        reader = csv.reader(f, delimiter=delim[sys.argv[2]])
-        for row in reader: # iterate through each line
-            p1 = shlex.split(row[0])[0]
-            p2 = shlex.split(row[2])[0]
-
-            if p1 not in ids:
-                ids[p1] = idc
-                idc = idc + 1
-                nodes.append({'id': ids[p1], 'name': p1 })
-            if p2 not in ids:
-                ids[p2] = idc
-                idc = idc + 1
-                nodes.append({'id': ids[p2], 'name': p2 })
-            
-            links.append({'source': ids[p1], 'target': ids[p2]})
-    f.close()
-
-    data = {'nodes': nodes, 'links': links}
-    
-    if args['attributes'] != 'None': # None for Galaxy
-        data['some'] = 'not in here'
-
-        # process attributes list 
-        with open(sys.argv[3]) as f:
-            reader = csv.reader(f, delimiter='\t')
-            ids_keys = ids.keys()
-            for row in reader:
-                propscnt = 0
-                if row[0] in ids_keys:
-                    pos = ids[row[0]]
-                    for props in range(len(row)-1):
-                        nodes[pos]['property'+str(propscnt)] = row[props+1]
-                        propscnt = propscnt +1
-        f.close()
-    
-    # write json data back to spec ified output file
-    with open(sys.argv[4], 'w') as out:
-        json.dump(data, out)
-    out.close()
-    
-if __name__ == "__main__":
-    __main__()
\ No newline at end of file