Mercurial > repos > computationaltranscriptomics > vgx_converter
changeset 6:eb471a967693 draft
Uploaded
| author | computationaltranscriptomics |
|---|---|
| date | Tue, 23 Feb 2016 09:18:55 -0500 |
| parents | d5b37e4fcf55 |
| children | 006d30548237 |
| files | vgx_converter.xml |
| diffstat | 1 files changed, 37 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vgx_converter.xml Tue Feb 23 09:18:55 2016 -0500 @@ -0,0 +1,37 @@ +<tool id="vgx_converter" name="SIF-to-VGX" version="0.0.1"> + <description>Converts a SIF file to a JSON file in node-link format for visualization in VisualGraphX</description> + <command interpreter="python">vgx_converter.py $input1 $delimiter $input2 $output</command> + <inputs> + <param format="txt" name="input1" type="data" label="Network"/> + <param format="tabular" name="input2" type="data" optional="true" label="Attributes"/> + <param name="delimiter" type="select" label="Delimiter"> + <option value="tab" selected="true">tab-delimited</option> + <option value="space">space-delimited</option> + </param> + </inputs> + <outputs> + <data format="json" name="output"/> + </outputs> + + <help> + This tool converts the simple interaction format (.sif) to the JavaScript Object Notation (.json) + that can be visualized using VisualGraphX. Furthermore, a attributes list can be provided to enhance + the information of the nodes in the graph. + </help> + + <tests> + <test> + <param name="input1" value="cvt_network.sif"/> + <param name="delimiter" value="space"/> + <param name="input2" value="cvt_attributes.venn"/> + <param name="output" value="cvt_nodelink.json"/> + </test> + <test> + <param name="input1" value="angiogenesis_network.sif"/> + <param name="delimiter" value="tab"/> + <param name="output" value="angiogenesis_nodelink.json"/> + </test> + </tests> + +</tool> +