Mercurial > repos > cpt > bprom_wrapper
changeset 0:33464b8cbde7 draft default tip
Uploaded
| author | cpt |
|---|---|
| date | Fri, 01 Jul 2022 13:33:13 +0000 |
| parents | |
| children | |
| files | bprom_wrapped/bprom bprom_wrapped/bprom.xml bprom_wrapped/bprom_libFiles/bs.list bprom_wrapped/bprom_libFiles/five.mat bprom_wrapped/bprom_libFiles/ldfb.tss |
| diffstat | 5 files changed, 659 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bprom_wrapped/bprom.xml Fri Jul 01 13:33:13 2022 +0000 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool id="edu.tamu.cpt.bprom" name="BPROM" version="1.0.0" profile="16.04"> + <description></description> + <macros/> + <requirements> + <requirement type="package">libgcc</requirement> + </requirements> + <command detect_errors="aggressive"> +export TSS_DATA=$__tool_directory__/bprom_libFiles; +$__tool_directory__/bprom $inFile $outFile +</command> + <inputs> + <param label="Fasta Sequence" name="inFile" type="data" format="fasta" /> + </inputs> + <outputs> + <data format="txt" name="outFile" label="BPROM Results" /> + </outputs> + <help> +**What it does** + +Runs BPROM analysis on a fasta file. + </help> + <tests/> + <citations> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {V. Solovyev, A Salamov}, + title = {Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, p. 61-78 }, + year = {2011}, + + } + </citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bprom_wrapped/bprom_libFiles/bs.list Fri Jul 01 13:33:13 2022 +0000 @@ -0,0 +1,558 @@ + 1 ada ATAAGAAT 7 8 24 41 1 1 88 1.7 1.2 1.1 + 4 araC AAGATTAG 24 8 7 13 1 1 38 3.4 2.9 1.6 + 5 araC TAACAAAA 8 8 61 83 7 5 181 3.1 2.7 1.0 + 6 araC TCCGACCT 36 8 31 7 2 0 63 2.3 2.3 1.4 + 7 araC GACATAAG 40 8 6 36 3 0 64 5.2 2.7 1.3 + 8 araC TCCTTGTT 40 8 14 52 1 0 95 2.4 0.8 1.2 + 9 araC ACAGAGGG 24 8 9 7 2 0 24 4.1 3.6 1.2 + 10 arcA ATTTGTAA 8 8 25 45 3 5 79 3.2 3.1 0.8 + 11 arcA TTAATTAA 2 8 66 66 8 8 203 3.2 3.2 1.3 + 12 arcA TAATTAAA 3 8 59 56 3 6 156 1.9 2.6 1.1 + 13 arcA TTAACTAA 2 8 20 15 1 2 52 1.9 2.7 1.2 + 14 arcA TAACTCAA 3 8 25 51 1 0 76 1.6 0.6 0.7 + 15 arcA TAATTATA 3 8 19 11 0 2 65 1.0 2.7 1.8 + 17 arcA TCATGTTT 6 8 42 64 3 0 105 2.4 1.3 0.6 + 18 arcA AATAAAAA 4 8 131 158 9 19 433 2.4 2.9 1.2 + 19 arcA AAAAGGGA 8 8 43 28 2 3 81 1.8 2.4 0.8 + 21 arcA TAACAATT 3 8 19 68 9 9 132 5.2 4.0 1.3 + 22 arcA AATTGTAA 4 8 7 22 2 1 54 4.4 3.0 1.6 + 23 arcA TCACAAAA 3 8 47 64 2 4 145 1.7 2.0 1.0 + 24 argR ATAAAAAT 6 8 118 181 11 5 376 2.8 2.0 1.0 + 25 argR ATAATCAT 6 8 23 163 3 3 217 3.3 1.3 0.9 + 26 argR TTTTTTAT 6 8 151 166 20 11 504 3.3 2.9 1.3 + 27 argR TTATAATT 6 8 24 28 3 3 89 3.2 3.1 1.4 + 28 argR ATATTCAT 6 8 80 172 2 5 254 0.9 1.1 0.7 + 30 argR AATAATTA 5 8 36 54 5 3 185 3.4 2.8 1.7 + 31 argR AATTCAAT 11 8 36 66 4 3 145 3.1 2.4 1.2 + 33 argR CATAAAAA 5 8 50 132 11 5 297 4.1 2.7 1.4 + 35 argR CATCCATA 11 8 25 136 2 3 155 2.6 1.2 0.6 + 36 argR TAATTCAT 10 8 23 98 3 2 157 3.3 1.6 1.0 + 37 argR AATTCATC 11 8 70 149 4 3 203 2.1 1.3 0.5 + 38 argR CACAATAA 5 8 25 73 5 2 120 3.9 2.4 0.9 + 39 argR AATTAATA 5 8 38 76 2 4 158 2.0 2.0 1.1 + 41 argR2 ATACACTA 12 8 7 3 2 1 26 4.4 4.5 2.0 + 42 argR2 CATATTTT 15 8 50 129 4 1 196 2.6 1.1 0.8 + 43 argR2 TTTTTATT 7 8 158 131 17 9 437 3.0 2.8 1.3 + 44 argR2 ACATATAA 14 8 9 28 4 1 61 5.1 3.4 1.4 + 45 argR2 TTTATTTT 17 8 132 185 9 3 328 2.4 1.5 0.7 + 46 argR2 ATATAAAT 16 8 39 82 4 2 189 3.0 1.9 1.3 + 47 argR2 GCAAATAA 14 8 66 131 3 2 190 1.8 0.9 0.6 + 48 carP CACTTTTT 10 8 59 224 8 8 310 3.4 2.1 0.8 + 49 carP CTGTAAAA 4 8 52 74 2 1 129 1.5 0.9 0.7 + 50 cpxR GTAAATTA 1 8 35 36 2 0 82 2.1 1.4 0.9 + 51 cpxR CTTGTAAG 8 8 5 20 2 1 34 4.9 3.2 1.1 + 52 cpxR TAAAATTA 2 8 95 56 6 1 148 2.3 1.8 0.6 + 54 cpxR TAAAACAA 2 8 74 61 3 2 157 1.6 1.5 0.9 + 55 cpxR TAAAAAGA 2 8 53 62 1 3 136 0.5 1.4 0.9 + 59 cpxR AGTGTAAA 8 8 27 35 4 8 77 3.5 3.9 1.0 + 60 cpxR GGAGTAAC 8 8 9 44 1 1 60 3.1 1.5 0.8 + 62 crp TGTCGTAA 13 8 19 89 0 2 103 1.0 0.8 0.6 + 63 crp TTTTGTTA 1 8 83 61 5 7 165 2.2 2.7 0.9 + 64 crp AAGTGTGA 1 8 15 25 1 7 62 2.3 3.9 1.3 + 65 crp TAGACACT 12 8 2 9 2 1 16 6.2 4.4 1.2 + 67 crp AGATCACA 12 8 19 23 2 3 71 3.0 3.2 1.4 + 68 crp TAATGTGA 1 8 23 36 2 2 72 2.7 2.4 0.9 + 70 crp TTAAATTG 6 8 26 58 3 0 106 3.1 1.7 1.0 + 71 crp ATGCGAGG 3 8 13 24 0 0 40 1.5 1.0 0.8 + 72 crp TCACACTT 15 8 25 15 6 1 56 4.2 3.7 1.1 + 73 crp AGATGTGA 1 8 31 29 5 0 57 3.6 2.8 0.6 + 74 crp TTAGATTA 9 8 9 3 3 0 20 4.7 4.5 1.4 + 75 crp GATGTGTA 7 8 20 26 1 0 46 1.9 1.3 0.7 + 77 crp AAATGTAA 1 8 21 38 3 4 93 3.4 3.2 1.3 + 78 crp AATAAATT 14 8 80 161 7 9 293 2.7 2.3 0.9 + 81 crp TCACATTT 15 8 31 35 13 2 93 5.0 4.1 1.2 + 82 crp TATACATA 7 8 4 29 0 1 51 3.2 1.8 1.3 + 83 crp ACACACAT 15 8 5 16 3 2 30 5.5 4.2 1.2 + 84 crp CTCGTTTT 14 8 36 39 3 1 71 2.7 2.0 0.6 + 85 crp AAATAACA 12 8 50 103 3 1 192 2.2 1.0 1.0 + 86 crp AACCCCTC 11 8 5 9 1 0 22 3.9 3.0 1.3 + 87 crp GTTAGCTC 9 8 7 17 0 0 46 2.4 1.7 1.6 + 88 crp ATAACAAT 13 8 51 94 2 6 171 1.6 2.1 0.9 + 89 crp TGTGATCT 4 8 23 19 4 2 65 3.7 3.4 1.3 + 90 crp CGCACATA 14 8 18 46 2 4 63 3.1 2.8 0.6 + 91 crp TTTTGCAA 1 8 70 115 2 3 179 1.1 1.0 0.6 + 92 crp TTAGTTCA 10 8 14 20 0 1 41 1.4 1.7 0.9 + 93 crp CACAGTGC 9 8 29 47 1 0 70 1.4 0.6 0.5 + 94 crp GTGCTCCC 5 8 8 15 1 1 29 3.2 2.7 1.0 + 95 crp ATCACAAA 14 8 47 88 2 5 166 1.7 2.0 1.0 + 96 crp TTTGTGAG 2 8 16 24 3 2 52 3.8 3.2 1.0 + 97 crp TCACAATT 15 8 24 45 2 4 85 2.7 2.7 1.0 + 98 crp AGGTAACA 12 8 44 53 2 3 92 1.8 2.0 0.6 + 99 crp ATGCCTGA 1 8 84 107 3 1 227 1.4 0.7 0.9 +100 crp TCATATCA 9 8 40 55 4 4 113 2.9 2.7 0.9 +101 crp TCAAACTT 15 8 35 72 3 0 101 2.7 1.3 0.6 +102 crp GTTCAATT 13 8 36 67 3 1 99 2.7 1.6 0.6 +106 crp ATTTGTGA 1 8 54 33 3 5 85 2.1 2.8 0.6 +108 crp GTGTGTAA 1 8 14 23 0 0 47 1.4 1.0 1.0 +109 crp GAAACATA 12 8 32 39 3 0 77 2.8 1.9 0.8 +110 crp TAACCAAT 15 8 39 90 3 2 121 2.5 1.6 0.6 +112 cspA GCAAGACA 11 8 22 25 1 2 43 1.8 2.3 0.5 +115 cynR TAAGGTAA 5 8 12 47 6 4 82 5.2 3.7 1.1 +116 cynR ATAAGTAA 4 8 19 51 1 2 101 2.0 1.7 1.2 +117 cysB TATAGTTA 5 8 10 33 2 2 72 3.9 2.8 1.4 +118 cysB TCTTGCAT 33 8 9 36 1 1 57 3.1 1.8 1.0 +119 cysB TGTATATA 13 8 15 11 6 1 37 4.9 4.4 1.2 +121 cytR TTCTGTAA 10 8 37 48 4 2 94 3.0 2.4 0.8 +122 cytR ACTTGTAA 9 8 8 19 5 2 32 5.6 4.3 0.9 +123 cytR ATAGAACT 3 8 6 29 2 0 37 4.7 2.4 0.7 +125 deoR AATTCTAA 7 8 6 9 1 2 30 3.7 3.9 1.7 +126 deoR TTAGAATA 3 8 7 10 3 0 36 5.0 4.0 1.7 +127 deoR AATTTTAT 7 8 90 128 10 3 238 3.1 2.2 0.8 +128 dnaA ATTCACAA 6 8 50 57 7 6 98 3.4 3.2 0.5 +129 dnaA CCACAAGT 8 8 19 22 0 8 38 1.0 4.0 0.5 +130 dnaA AGTTATCC 2 8 35 56 2 0 86 2.1 1.1 0.6 +131 dnaA TTGTTATC 1 8 90 102 6 1 175 2.3 1.5 0.5 +132 dnaA TATACACA 6 8 10 15 0 0 41 1.9 1.6 1.4 +133 dnaA TTTGGATA 4 8 16 31 0 6 46 1.2 3.4 0.6 +136 fadR CCGACCTA 8 8 20 5 1 0 49 1.9 2.2 1.6 +139 fadR GGACTTGT 9 8 13 14 4 0 30 4.5 3.7 0.8 +142 fadR AACTCATC 1 8 51 143 1 4 179 0.6 1.0 0.5 +144 farR TGTATTAT 1 8 24 14 2 0 36 2.7 2.3 0.6 +148 fhlA TCATTTTC 11 8 72 168 3 4 243 1.7 1.1 0.7 +150 fis TCTTAACT 18 8 20 15 0 1 46 0.9 1.7 1.1 +151 fis TCAGAGGA 1 8 9 29 1 1 48 3.1 2.0 1.0 +152 fis CTCATTTT 12 8 51 64 2 3 134 1.6 1.7 0.9 +154 fis TGTAAATT 12 8 12 38 3 1 91 4.2 2.6 1.5 +155 fis TTATCTAA 6 8 9 36 2 1 63 4.1 2.3 1.1 +156 fis ACAGTTGT 27 8 28 33 3 0 57 3.0 2.1 0.6 +157 fis TATACTTA 21 8 6 12 8 0 39 6.7 5.2 1.8 +158 fis TATTCTAT 16 8 17 5 1 1 28 2.2 2.8 1.0 +159 fis AATTATTT 18 8 97 40 6 5 201 2.2 2.6 1.2 +162 fis ACAATTAT 13 8 34 16 1 3 56 1.2 2.6 0.8 +163 fis AAATGTGA 16 8 35 31 1 12 87 1.1 3.9 1.1 +164 fis CCCTCCGT 1 8 14 7 1 0 26 2.4 2.4 1.0 +167 fis AAAAATAA 1 8 175 165 5 13 390 1.1 2.0 0.9 +168 fis TCTTTAAT 17 8 50 209 4 1 253 2.6 0.6 0.6 +169 flhCD TGAGGGGT 9 8 5 5 0 0 15 2.9 2.9 1.2 +170 flhCD GGGCTTTT 23 8 53 106 2 2 188 1.5 0.9 0.9 +172 fnr ATCAATTT 14 8 56 126 10 6 207 3.8 2.7 0.8 +173 fnr TTTTTTGA 1 8 75 152 2 8 277 1.0 1.7 0.9 +175 fnr ATCAATAA 14 8 116 235 10 6 320 2.7 1.8 0.5 +176 fnr TTATACAA 6 8 12 22 1 2 55 2.7 2.7 1.4 +177 fnr ACAATTTA 15 8 59 21 5 7 76 2.7 3.5 0.6 +179 fnr TAAATTGT 1 8 21 59 7 5 114 4.7 3.5 1.2 +180 fnr ATTTGTTT 3 8 60 78 2 7 147 1.3 2.3 0.7 +181 fnr ATAAATAT 8 8 102 109 4 6 246 1.6 1.8 0.9 +182 fnr TGTAAATC 9 8 21 88 3 6 130 3.4 2.6 0.9 +183 fnr TCAAGAGT 15 8 6 17 2 3 35 4.7 4.0 1.3 +185 fnr CCTACCTC 9 8 10 3 0 0 12 1.9 2.5 0.5 +193 fruR TGAATCGA 3 8 22 42 2 2 60 2.8 2.2 0.6 +198 fur ATAATTGT 2 8 15 34 3 1 78 3.9 2.6 1.3 +199 fur ATTTGCAT 8 8 49 76 5 4 128 3.0 2.5 0.7 +200 fur TAATGCTT 3 8 40 115 3 1 147 2.5 1.0 0.6 +201 fur ATGATAAT 5 8 60 104 2 2 175 1.3 0.9 0.8 +202 fur ATAATGAT 2 8 61 121 4 0 170 2.3 0.9 0.6 +203 fur ATCATTTT 11 8 68 148 4 0 235 2.2 0.7 0.8 +204 fur CATTATAG 4 8 5 16 3 8 44 5.5 5.3 1.7 +211 galR TGTAAGCG 2 8 13 64 0 3 84 1.5 1.8 0.8 +213 galR ATGTAACC 1 8 17 51 2 1 68 3.2 1.7 0.7 +214 gcvA AACTAATT 10 8 9 23 3 0 54 4.7 3.1 1.4 +215 gcvA TTATATTT 3 8 64 63 2 5 169 1.2 2.1 1.1 +216 gcvA ATAAGCTA 7 8 8 6 1 1 22 3.2 3.4 1.3 +217 gcvA ACTAATAG 11 8 3 8 1 0 19 4.7 3.4 1.4 +218 glpR TTCAAAAT 5 8 59 125 4 6 176 2.4 2.0 0.6 +219 glpR TCGAATTA 5 8 25 10 1 1 42 1.6 2.1 0.9 +225 glpR CACACATT 13 8 26 29 2 3 54 2.5 2.8 0.6 +227 glpR ACGATAAG 12 8 24 55 1 1 78 1.7 0.9 0.6 +229 glpR AATTTGAG 9 8 32 32 2 2 62 2.2 2.2 0.6 +231 hipB CCCTTAAG 11 8 6 8 0 0 30 2.7 2.4 1.8 +232 hipB AAAGGATA 17 8 27 39 2 2 80 2.5 2.2 0.9 +233 hipB TAAGATGT 23 8 8 23 1 2 46 3.2 2.9 1.2 +234 hipB CCTTTTTA 1 8 44 36 1 6 107 0.8 2.7 1.1 +235 hns TAGGCTGA 1 8 3 22 3 1 40 6.2 3.6 1.3 +239 hns ACAGAGTA 4 8 18 29 0 2 48 1.1 2.0 0.7 +244 hns AAAGGAAT 3 8 39 50 1 2 97 1.0 1.4 0.8 +245 hns TAATTTAA 2 8 42 40 1 2 100 0.9 1.5 0.9 +246 hns ATTAAATT 4 8 54 95 7 7 177 3.3 2.8 0.9 +255 ihf TTTTATTT 10 8 120 94 13 4 337 3.0 2.6 1.3 +256 ihf GCTTAGAG 16 8 4 8 0 0 19 3.2 2.7 1.3 +257 ihf TTGGAGTC 33 8 2 17 0 0 32 4.2 2.0 1.4 +258 ihf ATCATACA 12 8 11 30 3 6 64 4.4 4.1 1.3 +259 ihf TAGGATAA 41 8 1 8 0 3 22 5.2 4.9 1.9 +260 ihf AGATATAT 35 8 12 22 1 1 50 2.7 2.2 1.2 +261 ihf CCGGCCTA 2 8 19 2 0 0 155 1.0 1.9 3.5 +262 ihf CCATGTAG 41 8 5 61 0 1 71 2.9 0.8 0.8 +263 ihf AATAAAAT 8 8 86 156 2 8 298 0.8 1.6 1.0 +264 ihf TGTAGGCC 41 8 9 27 1 0 221 3.1 1.7 3.3 +265 ihf AAAGTATA 35 8 19 16 0 2 58 1.0 2.4 1.4 +266 ihf TAGATTAA 11 8 4 13 3 0 37 5.8 4.0 1.8 +267 ihf TATACTTT 3 8 16 19 2 0 63 3.2 2.4 1.5 +268 ihf ACAGACAA 11 8 30 46 1 1 74 1.3 1.0 0.6 +269 ihf TGATATGA 20 8 55 40 4 4 90 2.5 2.7 0.6 +270 ihf AGTATACA 36 8 2 6 0 5 19 4.2 5.7 1.9 +271 ihf CTCCTTGA 29 8 12 17 0 0 35 1.7 1.4 0.9 +272 ihf TAATCTAT 12 8 10 11 0 3 43 1.9 3.7 1.7 +273 ihf TTTCAAAA 37 8 88 112 10 7 186 3.1 2.7 0.6 +274 ihf AAATAAAA 20 8 94 120 4 13 335 1.7 2.6 1.3 +275 ihf TTAATTTA 18 8 52 44 1 1 139 0.5 0.7 1.2 +276 ihf GCTAATAG 14 8 9 24 0 1 36 2.1 1.8 0.8 +277 ihf CTTCGGGA 35 8 17 27 0 0 65 1.2 0.8 1.2 +278 ihf CTAAGGGC 32 8 5 10 1 0 22 3.9 2.9 1.2 +279 ihf TGTAAGAA 5 8 14 28 2 0 56 3.4 2.2 1.1 +280 ihf ACAAAAAA 28 8 136 67 6 10 238 1.7 2.6 0.9 +282 ilvY ATATATCA 2 8 32 18 2 5 58 2.2 3.4 0.9 +284 lacI AGTAACAA 12 8 23 55 0 4 85 0.7 2.1 0.8 +286 lexA TATATAAA 6 8 37 33 2 0 116 2.0 1.4 1.4 +287 lexA TATACAGT 12 8 8 24 1 3 43 3.2 3.2 1.1 +288 lexA TCCATACA 10 8 15 38 1 6 61 2.3 3.3 0.9 +289 lexA ATAAATAA 7 8 39 149 2 2 305 2.0 0.7 1.4 +290 lexA TATATACT 6 8 7 8 3 0 33 5.0 4.1 1.8 +291 lexA TATATACA 6 8 11 15 1 6 41 2.8 4.4 1.3 +292 lexA AAACCACA 10 8 57 121 2 2 164 1.4 0.8 0.5 +293 lexA TACTGTAT 1 8 21 16 6 4 43 4.4 4.4 0.9 +294 lexA ATATAAAA 7 8 62 69 8 4 182 3.3 2.8 1.1 +295 lexA TGTACACA 4 8 14 6 0 1 26 1.4 2.5 1.0 +298 lexA ATATATAC 9 8 8 22 5 2 45 5.6 4.1 1.2 +299 lexA ATAGATAA 7 8 28 86 2 3 133 2.4 1.7 0.9 +301 lexA TAAAAACA 10 8 109 130 4 4 250 1.5 1.3 0.7 +302 lexA TATATTCA 6 8 42 75 3 4 133 2.4 2.2 0.8 +303 lexA TTTTTTTA 6 8 69 113 10 6 351 3.5 2.7 1.6 +304 lexA TATATATA 6 8 14 14 2 2 48 3.4 3.4 1.4 +305 lrp ATCTTTTA 7 8 51 88 1 2 130 0.6 0.7 0.6 +306 lrp TATTTTTT 8 8 84 208 14 5 407 3.7 2.3 1.1 +307 lrp TTTAGTGT 18 8 15 32 2 0 54 3.3 2.0 0.9 +308 lrp ATTTTTTT 8 8 78 237 13 6 422 3.7 2.2 1.1 +309 lrp TTGTCTTA 1 8 18 11 2 2 30 3.1 3.4 0.7 +310 lrp TGCATTTT 18 8 90 137 8 3 210 2.8 1.9 0.5 +311 lrp TGTAGAAT 3 8 6 14 3 1 28 5.2 3.9 1.1 +312 lrp ATTTATTA 7 8 114 54 7 1 167 2.2 1.9 0.6 +313 lrp TTTCTTTT 18 8 75 172 6 3 288 2.6 1.5 0.9 +314 lrp TATTCTTA 7 8 43 15 3 2 62 2.4 2.7 0.8 +317 lrp TTGACAAT 16 8 20 33 2 0 54 2.9 1.8 0.7 +318 lrp TATTTATT 1 8 121 59 5 2 202 1.6 1.6 0.8 +319 lrp TAAGATAA 12 8 6 40 2 4 89 4.7 3.3 1.6 +321 lrp AATACATA 3 8 13 37 1 0 67 2.5 1.2 1.1 +322 lrp ATAACTAA 8 8 8 27 0 1 59 2.2 1.7 1.4 +325 malT AGGGAGGA 1 8 8 17 0 1 32 2.2 2.2 1.0 +328 malT GGGGAGGA 1 8 15 5 0 2 26 1.3 3.2 1.0 +333 marR TATACTTG 2 8 9 5 2 2 19 4.1 4.4 1.1 +334 marR CAACTAAT 16 8 11 28 2 2 42 3.8 3.0 0.8 +335 melR TCCCATAA 3 8 16 62 1 0 86 2.2 0.5 0.8 +339 metJ ATAAGCGT 7 8 54 72 2 1 156 1.5 0.9 1.0 +340 metJ ATACATCT 9 8 14 39 1 1 62 2.4 1.5 0.9 +342 metJ ACATCTAA 3 8 9 26 3 1 51 4.7 3.1 1.2 +344 metJ AGACATCC 1 8 13 60 0 2 76 1.5 1.4 0.7 +345 metJ TGTAAACA 6 8 22 29 3 1 58 3.4 2.6 0.8 +347 metJ GCTAAAAT 6 8 34 46 2 1 83 2.2 1.5 0.7 +348 metJ CTTTACAT 7 8 14 20 3 0 57 4.0 3.0 1.4 +350 metJ TAAACGGA 8 8 20 72 1 2 89 1.9 1.3 0.6 +351 metJ TAGATGTG 8 8 13 21 0 1 35 1.5 1.7 0.7 +362 metR ATTTTTCC 4 8 85 228 4 6 303 1.8 1.3 0.6 +363 metR TTTTTTCA 7 8 70 415 18 5 536 4.3 1.8 0.8 +364 metR TTCTTTTC 6 8 45 85 5 2 145 3.1 2.0 0.8 +365 metR CAAATTTT 4 8 63 73 5 4 153 2.6 2.3 0.8 +370 modE TATACAAG 6 8 6 5 0 1 17 2.7 3.4 1.3 +371 modE CTATATAC 3 8 6 6 0 2 14 2.7 4.0 0.9 +372 modE CCTACATA 14 8 6 9 1 1 35 3.7 3.3 1.9 +373 nagC CATTTCAC 3 8 59 137 4 2 188 2.4 1.2 0.6 +374 nagC GAAATAAG 16 8 31 53 3 2 92 2.9 2.2 0.8 +375 nagC ATATTTTA 2 8 80 42 2 0 127 0.9 0.6 0.7 +376 nagC ATTTTAGA 3 8 24 20 0 3 43 0.7 2.6 0.6 +377 nagC TTTAATTT 1 8 60 166 5 3 241 2.7 1.4 0.7 +378 nagC CTTATTTT 1 8 77 47 3 4 117 1.6 2.1 0.6 +380 narL TGCTCCTT 1 8 9 35 1 2 66 3.1 2.4 1.2 +381 narL TAACTCTT 1 8 15 72 2 1 94 3.3 1.4 0.8 +382 narL GTAAGGGT 8 8 7 28 1 1 50 3.4 2.1 1.2 +384 narL TCCCCATG 5 8 23 52 1 0 70 1.7 0.6 0.6 +385 narL TCCTAAAG 4 8 8 5 0 1 32 2.2 3.1 2.0 +386 narL AAGTAGTA 9 8 8 16 1 1 28 3.2 2.7 0.9 +387 narL TCGGGGTA 9 8 12 23 3 2 39 4.2 3.4 0.8 +388 narL ACTCCTTA 2 8 15 17 0 0 70 1.3 1.2 1.8 +389 narL TAACTCTA 1 8 13 14 3 1 26 4.1 3.5 0.6 +390 narP TTGAGGTA 9 8 17 39 5 4 61 4.5 3.6 0.8 +392 narP AAGGAGTA 9 8 14 14 2 1 44 3.4 3.0 1.3 +397 narP TTTAGAGT 7 8 10 14 0 3 26 1.9 3.5 0.8 +402 ntrC TGCACTAA 1 8 17 32 2 0 54 3.2 2.0 0.8 +403 ompR AAATCACA 1 8 47 61 3 3 111 2.3 2.1 0.7 +404 ompR TCATATTT 4 8 27 91 2 3 163 2.5 1.7 1.1 +405 ompR GTAACATA 11 8 4 31 1 2 47 4.2 2.7 1.1 +406 ompR TGTTTACA 7 8 29 22 1 2 55 1.4 2.2 0.8 +407 ompR TTTACATT 1 8 36 35 4 5 97 3.1 3.3 1.1 +408 ompR GTTACATA 11 8 16 16 2 1 43 3.2 2.8 1.1 +409 ompR TTCTTTTT 3 8 83 218 7 2 329 2.7 1.2 0.8 +410 ompR TTGTAGCA 7 8 10 52 2 5 74 3.9 3.1 0.9 +411 ompR ATATTACA 9 8 28 22 1 1 61 1.4 1.6 0.9 +412 oxyR ATTAGTGT 15 8 8 14 1 0 31 3.2 2.4 1.2 +413 oxyR CGGAGTAA 8 8 10 59 2 0 72 3.9 1.5 0.7 +414 oxyR GATTAATT 27 8 62 67 4 3 153 2.3 2.0 0.9 +415 oxyR TAGAATAG 20 8 2 7 0 2 25 4.2 4.4 2.1 +416 pdhR TTGTTAAA 3 8 67 62 4 5 141 2.2 2.4 0.8 +418 phoB TTTAATTA 13 8 56 56 6 3 148 3.0 2.6 1.1 +419 phoB CTGTCATA 1 8 23 48 4 1 81 3.7 2.4 0.8 +420 phoB TTTTCATA 1 8 33 116 2 5 228 2.2 1.8 1.3 +421 phoB ACGCATAA 15 8 35 90 4 0 126 3.1 1.5 0.7 +422 phoB TAATATAT 4 8 17 28 4 0 82 4.2 2.9 1.5 +423 phoB TAATCTGT 8 8 26 51 1 3 79 1.5 2.0 0.7 +424 phoB AATAAAAG 5 8 54 79 3 5 150 2.1 2.2 0.8 +425 phoB TTTATTAA 2 8 128 89 8 3 234 2.2 1.9 0.8 +426 phoB TGTCATCA 2 8 71 128 2 2 180 1.1 0.6 0.5 +428 phoB TCATAAAA 4 8 29 112 4 4 198 3.4 2.1 1.1 +429 phoB CTTACATA 1 8 11 5 1 0 30 2.8 2.8 1.6 +430 phoB CATCTTTC 5 8 50 196 7 1 233 3.4 1.3 0.6 +431 phoB ATGTAACA 12 8 11 35 3 1 69 4.4 2.7 1.2 +432 phoB TAATTCGA 15 8 10 25 1 1 55 2.9 2.1 1.3 +436 phoB3 TCCTTACA 21 8 18 7 2 1 40 3.1 3.2 1.3 +439 purR ATAAAAAG 1 8 58 72 6 8 176 3.0 3.0 1.1 +441 purR ATTTCAAG 15 8 18 26 1 2 53 2.1 2.4 0.9 +442 purR TAATCGTT 9 8 35 81 2 0 110 2.1 0.7 0.6 +444 purR CGCGAGGT 19 8 26 63 2 1 88 2.5 1.4 0.6 +445 purR TGAGGAAA 4 8 49 52 3 1 96 2.2 1.6 0.6 +446 purR TTTTTAAG 1 8 45 65 9 1 128 3.9 2.8 0.9 +449 purR CAAGGAAA 4 8 39 54 1 2 85 1.0 1.3 0.5 +450 purR CTTTTTCT 19 8 79 221 6 3 288 2.5 1.2 0.6 +451 purR TTTTCGTT 15 8 66 123 3 6 175 1.8 1.9 0.5 +453 purR CTTTCCCT 19 8 37 51 2 1 89 2.0 1.4 0.7 +455 purR GAAACGAG 1 8 17 42 1 0 58 2.2 0.9 0.6 +456 purR TTTCGTTT 16 8 66 82 2 4 140 1.2 1.6 0.6 +458 purR CGTTTTTT 19 8 83 188 7 2 305 2.7 1.3 0.8 +460 rhaS TCCTGTCA 30 8 33 28 3 2 61 2.8 2.6 0.7 +462 rpoD15 AGCCTAAA 11 8 13 22 1 5 33 2.5 3.7 0.6 +463 rpoD15 AACGCATA 11 8 41 81 2 0 116 1.9 0.6 0.6 +464 rpoD15 ACATACTA 4 8 4 4 5 0 17 6.6 5.7 1.7 +465 rpoD15 CATGATAG 17 8 6 33 2 0 46 4.7 2.3 0.9 +466 rpoD15 TAGCTTAT 17 8 6 8 1 1 25 3.7 3.4 1.5 +467 rpoD15 TTTTGTAA 19 8 21 86 6 5 143 4.4 3.0 1.1 +468 rpoD15 TTTTGTTT 15 8 79 137 13 0 254 3.6 2.2 0.9 +469 rpoD15 TAAGGTTA 16 8 12 37 1 1 82 2.7 1.6 1.4 +470 rpoD15 TTTTCACG 1 8 44 186 3 6 225 2.4 1.6 0.6 +471 rpoD15 GCTCAAGA 9 8 9 69 2 0 75 4.1 1.3 0.6 +472 rpoD15 TGTGTAGG 13 8 3 4 1 1 21 4.7 4.4 2.2 +473 rpoD15 TAATGTTT 2 8 41 89 9 4 157 4.1 2.9 0.9 +474 rpoD15 CTAAATAA 19 8 16 35 0 0 74 1.2 0.6 1.2 +475 rpoD15 TCCTCTGT 17 8 30 22 5 2 58 3.7 3.4 0.8 +476 rpoD15 AGAGTCAA 18 8 13 23 1 5 41 2.5 3.7 0.8 +477 rpoD15 TTTGTGTA 18 8 9 29 1 1 62 3.1 2.0 1.4 +478 rpoD15 TTAACACA 11 8 13 33 2 5 66 3.5 3.5 1.2 +479 rpoD15 CCTCTCCC 4 8 34 22 1 0 71 1.2 1.0 1.0 +480 rpoD15 CCCTTAAA 18 8 13 13 2 0 44 3.5 2.9 1.4 +481 rpoD15 TATAAGTC 2 8 4 20 3 5 43 5.8 4.7 1.5 +482 rpoD15 GGTATACT 20 8 8 12 4 1 32 5.2 4.2 1.3 +483 rpoD15 AGGATTAA 17 8 38 50 4 1 95 3.0 2.1 0.8 +484 rpoD15 TGTCTCAC 2 8 16 10 1 1 30 2.2 2.5 0.9 +485 rpoD15 TTTTAACA 7 8 36 98 7 8 168 3.9 3.1 1.0 +486 rpoD15 GTGAATAG 17 8 12 40 1 1 62 2.7 1.5 0.9 +487 rpoD15 AAGGTAGA 18 8 13 31 4 0 44 4.5 3.0 0.7 +488 rpoD15 TTTTCGCA 8 8 60 109 3 1 162 1.9 0.8 0.6 +489 rpoD16 CACATTTC 3 8 31 56 8 2 89 4.3 3.1 0.7 +491 rpoD16 GCTTTTTA 6 8 68 95 8 3 163 3.2 2.4 0.7 +492 rpoD16 TTGCAAAT 14 8 49 70 5 2 109 3.0 2.2 0.5 +493 rpoD16 TCATAACA 20 8 20 32 3 2 69 3.5 2.9 1.1 +495 rpoD16 CGTATAAT 21 8 7 16 7 1 38 6.2 4.7 1.4 +496 rpoD16 ACCTAAAT 7 8 9 46 2 1 64 4.1 2.1 0.9 +499 rpoD16 ACGGTATA 19 8 21 66 2 0 81 2.9 1.1 0.6 +500 rpoD16 TCGCCCCT 16 8 36 76 4 2 113 3.1 2.0 0.7 +501 rpoD16 TTTCAAAT 16 8 33 66 2 3 124 2.2 1.9 1.0 +502 rpoD16 TAGCGTAA 18 8 18 53 2 2 70 3.1 2.1 0.6 +503 rpoD16 CAGATATA 8 8 20 54 3 0 87 3.5 1.8 0.9 +504 rpoD16 ATTTCATA 17 8 20 80 5 4 139 4.2 2.8 1.1 +506 rpoD16 TTTTTATA 19 8 68 87 4 8 240 2.2 2.6 1.3 +507 rpoD16 TGTCAAGA 2 8 3 6 1 1 22 4.7 4.1 1.9 +508 rpoD16 CCCCATAA 20 8 11 77 2 0 99 3.8 1.1 0.8 +509 rpoD16 TTCAATCT 18 8 35 124 3 1 160 2.7 0.9 0.7 +510 rpoD16 TAGTTCGG 3 8 2 31 1 3 42 5.2 3.2 1.0 +512 rpoD16 TCTTTAGG 21 8 8 18 2 0 38 4.2 2.9 1.2 +513 rpoD16 TAGAATGC 9 8 2 18 10 0 32 8.6 5.3 1.3 +516 rpoD16 CTCCTGAT 11 8 24 67 2 2 107 2.7 1.7 0.9 +517 rpoD16 CCTTATAA 20 8 9 7 2 0 43 4.1 3.6 2.1 +518 rpoD16 AAATAATT 4 8 35 97 5 5 241 3.4 2.5 1.5 +519 rpoD16 TGTAGACT 21 8 2 8 4 1 16 7.2 5.2 1.3 +522 rpoD16 GTTAGGGT 21 8 15 14 1 0 41 2.3 2.0 1.2 +523 rpoD16 GAGTATAA 20 8 15 18 2 2 39 3.3 3.2 0.9 +524 rpoD16 ACAGTATA 19 8 13 9 2 5 31 3.5 4.6 1.2 +525 rpoD16 TTATAAAA 1 8 67 45 7 6 129 3.0 3.1 0.9 +526 rpoD16 TAATTAGA 19 8 5 10 1 2 37 3.9 3.9 2.0 +528 rpoD16 TAGAGCAC 3 8 10 37 1 1 58 2.9 1.7 1.0 +529 rpoD16 TGTATAAT 21 8 10 8 2 1 29 3.9 3.7 1.3 +531 rpoD16 AGTCTCAA 19 8 21 9 1 1 30 1.9 2.3 0.7 +532 rpoD16 AGTGTAAT 16 8 12 38 1 2 58 2.7 2.2 0.9 +533 rpoD16 CCTACAAT 21 8 10 10 1 1 30 2.9 2.9 1.2 +534 rpoD16 AACTAGTT 18 8 2 2 4 4 13 7.2 7.2 2.4 +535 rpoD16 CATAGTGT 13 8 4 29 3 0 49 5.8 3.0 1.2 +536 rpoD16 TGATATAA 20 8 13 71 2 0 102 3.5 1.2 0.9 +537 rpoD17 AACTAAAC 15 8 20 29 1 3 49 1.9 2.6 0.7 +539 rpoD17 CGTTGTAA 5 8 19 79 3 0 104 3.6 1.4 0.7 +540 rpoD17 ACTTTTGT 6 8 22 38 7 1 71 4.6 3.3 0.9 +542 rpoD17 TTTGTTTT 18 8 75 159 7 6 278 2.8 2.1 0.9 +545 rpoD17 TATAGATT 22 8 7 23 3 0 42 5.0 3.1 1.1 +547 rpoD17 ATTTTGTA 6 8 38 84 3 2 146 2.6 1.6 0.9 +549 rpoD17 CCAAATTG 8 8 24 42 2 1 62 2.7 1.8 0.6 +550 rpoD17 CTTAAAAT 22 8 25 40 1 4 88 1.6 2.5 1.1 +551 rpoD17 ACTTTTAG 4 8 13 16 3 0 34 4.1 3.2 0.9 +552 rpoD17 TGATAATT 2 8 44 119 3 4 196 2.4 1.7 0.9 +554 rpoD17 CCCATAAC 22 8 29 60 4 0 82 3.4 1.9 0.5 +555 rpoD17 GAGACACA 1 8 18 17 5 0 34 4.4 3.6 0.6 +559 rpoD17 TAATGTAA 8 8 10 43 5 1 78 5.2 3.1 1.2 +560 rpoD17 CCTATAGT 22 8 3 6 2 1 18 5.7 4.7 1.7 +562 rpoD17 ATTAGTTA 3 8 13 8 1 0 39 2.5 2.4 1.5 +563 rpoD17 TTAGGCTA 18 8 9 2 1 2 12 3.1 4.4 0.8 +569 rpoD17 ATACTATA 6 8 10 3 1 0 18 2.9 3.1 1.1 +570 rpoD17 ACAAGTGT 12 8 7 12 2 5 25 4.4 4.8 1.1 +571 rpoD17 GACCCCAC 3 8 9 16 0 0 31 2.1 1.6 1.0 +572 rpoD17 AATAGTTA 12 8 12 41 2 4 80 3.7 3.1 1.3 +573 rpoD17 CAATTCTA 18 8 8 6 2 1 23 4.2 4.0 1.4 +575 rpoD17 AGTTAATA 21 8 20 43 3 0 92 3.5 2.1 1.2 +576 rpoD17 CTTATAAG 17 8 10 10 2 2 30 3.9 3.9 1.2 +577 rpoD17 TACCTAAA 2 8 10 27 1 0 49 2.9 1.6 1.1 +578 rpoD17 CAATTCAT 6 8 42 47 4 2 94 2.9 2.4 0.7 +580 rpoD17 AATAAGTA 11 8 15 32 1 4 71 2.3 3.0 1.3 +582 rpoD17 AATAAATA 3 8 59 121 2 4 253 1.4 1.3 1.1 +584 rpoD17 TGCTTGTA 21 8 10 32 1 1 52 2.9 1.9 1.0 +585 rpoD17 CATATAGT 22 8 5 25 1 4 35 3.9 3.7 0.9 +587 rpoD17 AGATCGGA 12 8 7 62 1 1 69 3.4 1.1 0.7 +588 rpoD17 TTCCTCCT 10 8 21 26 2 1 52 2.9 2.3 0.8 +589 rpoD17 AAAAATAG 5 8 60 89 4 2 182 2.3 1.6 0.9 +590 rpoD17 TTGATATA 1 8 19 70 4 4 100 4.0 2.8 0.8 +591 rpoD17 TAACGGAT 2 8 24 69 3 0 90 3.2 1.5 0.6 +592 rpoD17 AAATCAGA 20 8 63 106 4 3 173 2.3 1.7 0.7 +593 rpoD17 TTTTGTAT 12 8 46 52 1 2 118 0.7 1.2 0.9 +594 rpoD17 CGCCTTTT 10 8 52 154 3 3 206 2.1 1.1 0.7 +595 rpoD17 TGTAAAAT 22 8 18 45 2 1 87 3.1 1.9 1.1 +596 rpoD17 CCCGTAGG 20 8 8 14 1 0 54 3.2 2.4 2.0 +597 rpoD17 AATTTTCT 13 8 59 111 5 3 177 2.7 1.8 0.7 +598 rpoD17 CTCCTTTT 7 8 24 27 0 1 75 0.7 1.2 1.2 +599 rpoD17 CCAAATAG 12 8 6 21 4 0 30 5.7 3.7 0.8 +602 rpoD17 TTTTACTT 7 8 59 78 3 4 156 1.9 2.0 0.8 +603 rpoD17 CTAAACCA 9 8 21 62 2 1 81 2.9 1.5 0.6 +604 rpoD17 TTTTATAG 21 8 21 54 1 3 98 1.9 2.0 1.0 +605 rpoD17 CTCTGTAG 9 8 12 14 5 0 37 5.0 4.0 1.2 +606 rpoD17 CAAGAGGG 4 8 10 9 1 0 20 2.9 2.6 0.7 +607 rpoD17 AGTAGAAT 22 8 7 19 3 0 35 5.0 3.4 1.1 +608 rpoD17 ATACTTAA 4 8 11 37 5 1 74 5.1 3.2 1.3 +609 rpoD17 AATCTTTA 10 8 52 88 6 0 142 3.1 1.8 0.7 +610 rpoD17 GTTATACT 13 8 8 8 5 1 25 5.6 4.8 1.3 +611 rpoD17 GAGTAAAA 21 8 39 68 2 1 119 2.0 1.1 0.8 +613 rpoD17 CTAACCCT 17 8 15 23 3 0 53 3.9 2.8 1.1 +614 rpoD17 TAGCAACA 21 8 24 53 3 1 77 3.2 2.0 0.7 +615 rpoD17 TAGCCTTT 17 8 16 85 3 2 97 3.8 1.9 0.6 +616 rpoD17 GCATAATG 6 8 21 113 4 0 151 3.9 1.4 0.8 +618 rpoD17 CTTACTTT 17 8 29 25 1 0 54 1.4 1.1 0.7 +619 rpoD17 TTTTCCTT 1 8 55 102 5 2 167 2.8 1.8 0.7 +620 rpoD17 TTCCCTGT 16 8 27 51 3 5 74 3.1 3.0 0.6 +621 rpoD17 CCCCTTTT 3 8 16 46 4 4 91 4.2 3.3 1.2 +622 rpoD17 TTGTGAAT 1 8 55 50 6 7 98 3.1 3.2 0.6 +623 rpoD17 ATAATAAT 22 8 62 137 5 3 220 2.6 1.6 0.8 +624 rpoD17 CAGCATAC 19 8 29 140 1 3 157 1.4 0.8 0.6 +626 rpoD17 TCCCTTTT 2 8 28 43 3 1 94 3.0 2.1 1.1 +627 rpoD17 TAGGAATA 1 8 4 19 0 1 32 3.2 2.3 1.1 +628 rpoD17 GCTACAAT 22 8 25 19 5 1 47 3.9 3.4 0.8 +629 rpoD17 CATGCTAA 19 8 18 16 4 0 37 4.1 3.3 0.8 +630 rpoD17 ACAATCTT 7 8 23 52 2 1 77 2.7 1.6 0.7 +631 rpoD17 TTGGAATA 18 8 5 42 2 1 52 4.9 2.3 0.8 +632 rpoD17 GGAGTGTA 9 8 14 19 2 1 35 3.4 2.8 0.7 +634 rpoD17 CGTATACT 22 8 9 11 1 0 21 3.1 2.5 0.7 +635 rpoD17 ATAACAGG 6 8 11 60 1 5 100 2.8 2.7 1.2 +636 rpoD17 CCCCTGGA 4 8 15 43 1 0 60 2.3 1.0 0.7 +638 rpoD17 CCTATACT 22 8 4 3 3 0 13 5.8 5.2 1.5 +639 rpoD17 ACAGGAAT 19 8 35 77 3 2 124 2.7 1.8 0.8 +640 rpoD17 TGTTATAA 21 8 13 31 2 0 64 3.5 2.1 1.2 +641 rpoD17 GTTCGAGG 8 8 11 55 1 0 60 2.8 0.8 0.5 +642 rpoD17 CCCTAAAA 21 8 6 15 2 0 29 4.7 3.2 1.1 +643 rpoD17 TTATGATA 18 8 32 22 2 3 54 2.2 2.8 0.7 +644 rpoD17 TTTATAAT 22 8 37 52 6 3 109 3.6 2.9 0.9 +645 rpoD17 CTCCATAG 19 8 2 12 2 1 25 6.2 4.0 1.5 +647 rpoD17 CTTAACCT 22 8 47 14 1 1 63 0.7 1.3 0.7 +648 rpoD17 GTCCTACA 20 8 5 3 0 0 14 2.9 3.2 1.5 +649 rpoD17 GTGTCATA 20 8 11 51 2 0 64 3.8 1.6 0.7 +650 rpoD17 ATTAGAGT 16 8 3 13 1 0 23 4.7 2.8 1.2 +651 rpoD17 TGCAATAA 9 8 48 114 6 4 150 3.2 2.2 0.5 +652 rpoD17 TTGTCTGA 1 8 34 32 1 0 80 1.2 0.8 0.9 +653 rpoD18 GATAGAAT 23 8 9 17 2 2 31 4.1 3.5 0.9 +654 rpoD18 ACTTGTTA 10 8 14 18 3 0 39 4.0 3.1 0.9 +655 rpoD18 ATCATTGT 13 8 55 49 2 1 96 1.5 1.1 0.5 +656 rpoD18 AATTGAGG 7 8 14 28 0 1 56 1.4 1.4 1.1 +657 rpoD18 AGTGTAGT 23 8 4 27 1 0 46 4.2 1.9 1.2 +658 rpoD18 TTGCTTTT 1 8 93 129 6 2 209 2.3 1.5 0.6 +660 rpoD18 AGGCCCTC 8 8 5 6 1 0 11 3.9 3.4 0.7 +661 rpoD18 ACGACCCC 16 8 6 15 0 0 21 2.7 1.9 0.7 +664 rpoD18 AAATATAT 11 8 83 34 4 4 117 1.9 2.4 0.7 +666 rpoD18 TTGAGATA 1 8 17 96 3 2 133 3.7 1.7 0.9 +667 rpoD18 GTGAGGGA 15 8 7 21 1 2 42 3.4 3.0 1.2 +669 rpoD18 TTACACTT 2 8 25 12 11 1 45 5.1 4.6 0.9 +670 rpoD18 TTGATAGG 1 8 4 28 1 2 45 4.2 2.8 1.1 +671 rpoD18 TGTATGAT 23 8 30 11 6 3 43 3.9 4.1 0.7 +672 rpoD18 CTTATACT 23 8 13 10 2 0 29 3.5 3.0 1.0 +673 rpoD18 AGTACGGG 17 8 14 53 1 0 67 2.4 0.8 0.7 +675 rpoD18 GGCATAAT 23 8 34 85 3 0 120 2.7 1.2 0.7 +677 rpoD18 TTAATTTT 4 8 77 160 5 3 271 2.3 1.4 0.9 +680 rpoD18 GTACAATC 10 8 16 34 2 0 48 3.2 1.9 0.6 +682 rpoD18 TTTAAAAT 23 8 63 101 2 5 171 1.3 1.7 0.7 +684 rpoD18 AGACTACT 12 8 8 10 2 2 21 4.2 4.1 0.9 +686 rpoD18 GGTAGACT 23 8 6 15 3 0 21 5.2 3.7 0.7 +687 rpoD19 ACGTGCTA 20 8 12 11 2 1 33 3.7 3.3 1.2 +688 rpoD19 ATTGTTTT 6 8 75 130 3 6 213 1.6 1.7 0.7 +693 rpoD19 TGTGTTAG 21 8 17 9 1 0 30 2.2 2.1 0.9 +694 rpoD19 CGGAGTAG 14 8 10 36 2 0 44 3.9 2.0 0.6 +697 rpoD19 ACAGATTT 13 8 38 72 1 4 109 1.0 1.8 0.6 +698 rpoD19 TTTCATAT 21 8 29 79 2 5 146 2.4 2.3 1.1 +699 rpoD19 GCTATAAT 24 8 8 11 2 3 30 4.2 4.3 1.3 +700 rpoD19 TTACCTCA 2 8 34 19 4 6 50 3.2 3.8 0.6 +701 rpoD19 GAATGTAG 21 8 14 46 2 0 56 3.4 1.7 0.6 +703 rpoD19 ACTAGCGA 20 8 5 3 1 0 16 3.9 3.8 1.7 +704 rpoD19 CACCTAAA 5 8 15 53 3 1 64 3.9 2.2 0.6 +705 rpoD19 GTGATCTA 20 8 20 8 5 0 38 4.2 3.9 1.1 +706 rpoD19 TTAACATG 1 8 21 41 4 1 70 3.9 2.6 0.8 +707 rpoD19 TACTTAAA 15 8 16 27 3 0 49 3.8 2.6 0.8 +709 rpoD19 CAAGCTTG 5 8 17 17 3 3 35 3.7 3.7 0.7 +710 rpoD19 TGTTGTGT 21 8 34 46 2 2 88 2.2 1.9 0.8 +711 rpoD19 TCCTGCTA 14 8 22 11 3 0 34 3.4 3.0 0.7 +712 rpoE ACTTTACA 5 8 20 13 3 0 43 3.5 3.0 1.0 +713 rpoE GTCTGATA 24 8 36 39 5 1 82 3.4 2.6 0.8 +715 rpoH2 TTTTTTTT 4 8 24 79 6 4 201 4.2 2.9 1.6 +716 rpoH2 TCTCCCTT 33 8 20 18 1 0 49 1.9 1.6 1.0 +717 rpoH2 CTCTCCCA 40 8 27 35 2 1 61 2.5 1.9 0.6 +718 rpoH2 AAATAATG 6 8 83 114 2 3 179 0.9 0.9 0.5 +719 rpoH2 ACAAAAGA 6 8 44 38 2 5 77 1.8 2.7 0.6 +720 rpoH2 ATTCTACC 36 8 20 14 3 4 37 3.5 4.0 0.8 +721 rpoH2 CCCTTTAA 20 8 22 49 1 1 88 1.8 1.1 1.0 +722 rpoH3 CTCCCCCT 16 8 10 18 0 0 34 1.9 1.4 0.9 +723 rpoH3 CAAAAAAA 2 8 142 64 4 9 251 1.1 2.3 0.9 +725 rpoH3 CTTCCCTT 17 8 22 35 2 0 56 2.8 1.7 0.6 +726 rpoH3 CTTGAATA 22 8 19 21 2 1 37 3.0 2.5 0.5 +727 rpoH3 CTGATAAG 13 8 39 97 2 1 288 2.0 0.7 1.7 +728 rpoH3 CCCCCCAT 40 8 2 19 0 0 31 4.2 1.9 1.2 +729 rpoH3 AATAACTC 35 8 20 63 0 3 102 0.9 1.7 1.0 +735 rpoN AAATTGTA 9 8 23 29 4 2 58 3.7 3.1 0.8 +737 rpoS17 TTATGTTT 8 8 58 44 3 1 106 2.0 1.6 0.7 +738 rpoS17 CCCCCTCC 5 8 5 11 0 0 33 2.9 2.2 1.7 +739 rpoS17 CTATTATA 20 8 4 10 2 1 22 5.2 4.0 1.3 +740 rpoS17 GGAGGGTG 3 8 14 15 0 0 41 1.4 1.4 1.2 +741 rpoS17 CTCACAAA 2 8 24 16 3 3 45 3.2 3.5 0.8 +744 rpoS17 CAGACATA 20 8 13 58 1 2 91 2.5 1.7 1.0 +747 rpoS17 CGGCTAGT 22 8 3 2 0 0 8 3.7 3.9 1.3 +748 rpoS17 AGAGGGAG 13 8 9 8 1 0 21 3.1 2.7 1.0 +749 rpoS17 TTATATTA 21 8 29 16 3 1 73 3.0 2.8 1.4 +752 rpoS18 GTAGTCTA 19 8 2 0 1 1 3 5.2 5.9 0.9 +753 rpoS18 TGTCATGA 2 8 23 35 2 1 58 2.7 2.0 0.7 +756 rpoS18 TAGTTTAG 4 8 4 9 2 1 19 5.2 4.1 1.2 +757 rpoS18 CAGCTAGT 10 8 3 3 1 1 8 4.7 4.7 1.1 +758 soxS GATAAGCG 17 8 63 142 3 4 242 1.9 1.4 0.9 +759 soxS TATCATTT 28 8 44 64 2 5 125 1.8 2.3 0.9 +760 soxS TTGCTCCT 25 8 14 56 1 1 81 2.4 1.1 0.9 +762 soxS AACTGTAA 13 8 26 57 2 4 85 2.5 2.5 0.7 +763 soxS ATTTGTTA 24 8 45 35 2 1 105 1.8 1.5 1.0 +764 soxS AACCCCCG 24 8 11 29 1 0 51 2.8 1.5 1.0 +767 soxS ATAATTCA 28 8 19 89 3 1 150 3.6 1.5 1.1 +768 soxS CTTTTCCC 20 8 30 77 2 0 109 2.3 0.8 0.7 +769 soxS CAAGTATA 25 8 5 9 2 2 21 4.9 4.4 1.2 +770 soxS AAACCATA 21 8 30 90 1 2 121 1.3 0.9 0.7 +771 soxS AATTTCTT 15 8 45 186 4 3 233 2.8 1.2 0.7 +772 torR GTTCATAT 3 8 26 77 2 3 125 2.5 1.9 0.9 +778 trpR TTAACTAG 11 8 0 3 1 1 9 7.2 5.4 2.0 +779 trpR TACTCTTT 5 8 29 77 2 1 108 2.4 1.1 0.7 +780 tus TAGTATGT 4 8 4 4 0 5 15 3.2 5.7 1.6 +781 tus ATAAGTAT 2 8 21 31 0 4 53 0.9 2.7 0.7 +782 tus TAACTAAT 14 8 7 13 0 1 40 2.4 2.5 1.7 +783 tus CATTAGTA 1 8 11 24 0 1 42 1.8 1.7 0.9 +784 tus TAACTAAG 14 8 5 6 0 1 16 2.9 3.4 1.2 +785 tus TTGTAACG 11 8 16 79 1 4 95 2.2 2.0 0.7 +787 tyrR TAAATAAA 5 8 89 105 5 5 239 2.1 2.0 1.0 +788 tyrR TATACAGA 15 8 12 34 1 4 63 2.7 3.0 1.1 +789 tyrR GTGTAAAA 2 8 37 41 2 3 72 2.0 2.3 0.5 +790 tyrR TTTACAAT 15 8 21 22 1 1 48 1.9 1.8 0.8 +791 tyrR TGAGATTT 8 8 34 66 2 0 103 2.2 0.9 0.7 +792 tyrR TGTAATTT 3 8 15 81 1 3 126 2.3 1.7 1.0 +793 tyrR CTTACACA 15 8 15 9 0 0 29 1.3 1.7 0.9 +794 tyrR TTAATACA 13 8 20 57 1 0 95 1.9 0.6 1.0 +795 tyrR AATATATA 11 8 24 28 1 0 92 1.7 1.1 1.5 +799 tyrR TATGTAAC 1 8 16 16 1 2 41 2.2 2.8 1.0 +800 tyrR ATTGTACA 1 8 9 14 1 3 29 3.1 3.7 1.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bprom_wrapped/bprom_libFiles/five.mat Fri Jul 01 13:33:13 2022 +0000 @@ -0,0 +1,25 @@ + 9 + -2 -7 -8 -20 18 1 10 10 -20 + -1 -7 -2 -10 -20 -8 -8 0 -20 + 0 7 4 -20 -20 -9 -6 -14 -20 + 3 0 3 16 -20 8 -4 -10 18 + 6 + -14 -20 -11 8 1 6 + -19 -20 -8 3 7 -16 + -17 -20 12 -20 -16 0 + 16 17 -7 -5 -1 1 + 7 + 3 2 6 7 19 -20 -20 + -5 -4 -10 -2 -20 0 6 + 0 -3 -10 -11 -20 -1 1 + 1 4 5 0 -20 10 4 + 7 + 0 7 3 6 10 -20 1 + -7 -20 -14 3 -20 8 -1 + -5 -20 -15 -20 -20 11 3 + 7 10 9 1 9 -20 -4 + 5 + -20 6 -1 4 4 + 16 -20 -19 -6 -3 + -5 0 3 -6 -14 + -20 5 6 4 5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bprom_wrapped/bprom_libFiles/ldfb.tss Fri Jul 01 13:33:13 2022 +0000 @@ -0,0 +1,42 @@ + 7 + 0.0635 0.0364 0.0077 0.0343 0.0141 0.0293 0.0728 -5.3741 + 10 probs for motif 1 location + 40 -11 + 41 -13 + 42 -4 + 43 -10 + 44 -5 + 45 7 + 46 14 + 47 4 + 48 -5 + 49 -3 + 9 probs for motif 2 location + 21 -1 + 22 -2 + 23 -2 + 24 -2 + 25 3 + 26 5 + 27 0 + 28 -2 + 29 -1 + 18 probs for distance between motif 1 and motif 2 + 5 -32 + 6 -32 + 7 -22 + 8 -22 + 9 -6 + 10 -8 + 11 0 + 12 5 + 13 11 + 14 22 + 15 9 + 16 -3 + 17 3 + 18 5 + 19 -1 + 20 -18 + 21 -24 + 22 -32