Mercurial > repos > cpt > cpt_annotation_table
comparison phage_annotation_table.xml @ 4:9cb37bf9e298 draft
planemo upload commit 5177fcac0d170bfed52e728b26e4ca3ea98660d2-dirty
| author | cpt |
|---|---|
| date | Fri, 24 May 2024 04:16:49 +0000 |
| parents | 83af8dfd079d |
| children | c618332f2386 |
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| 3:83af8dfd079d | 4:9cb37bf9e298 |
|---|---|
| 1 <tool id="edu.tamu.cpt2.phage.annotation_table" name="Annotation Table" version="20.0.0.1"> | 1 <tool id="edu.tamu.cpt2.phage.annotation_table" name="Annotation Table" version="20.0.0.1"> |
| 2 <description>from gff3 formatted datasets</description> | 2 <description>from gff3 formatted datasets</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 | |
| 6 </macros> | 5 </macros> |
| 7 <expand macro="requirements"> | 6 <expand macro="requirements"> |
| 8 <requirement type="package" version="2.10.1">jinja2</requirement> | 7 <requirement type="package" version="2.10.1">jinja2</requirement> |
| 9 </expand> | 8 </expand> |
| 10 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 17 --reportTemplateName "$report_format" | 16 --reportTemplateName "$report_format" |
| 18 --annotationTableCols "$cols,$gaf_cols" | 17 --annotationTableCols "$cols,$gaf_cols" |
| 19 #if $gaf_data: | 18 #if $gaf_data: |
| 20 --gafData "$gaf_data" | 19 --gafData "$gaf_data" |
| 21 #end if | 20 #end if |
| 22 '$checkSubfeats' | 21 --searchSubs '$checkSubfeats' |
| 23 > '$output']]></command> | 22 > '$output']]></command> |
| 24 <inputs> | 23 <inputs> |
| 25 <expand macro="gff3_input"/> | 24 <expand macro="gff3_input"/> |
| 26 <expand macro="genome_selector"/> | 25 <expand macro="genome_selector"/> |
| 27 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/> | 26 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/> |