Mercurial > repos > cpt > cpt_annotation_table
comparison phage_annotation_table.xml @ 5:c618332f2386 draft
planemo upload commit 8e1cddcc571bcc769e20a50cefd14053be5633d6-dirty
| author | cpt |
|---|---|
| date | Fri, 24 May 2024 04:42:01 +0000 |
| parents | 9cb37bf9e298 |
| children | ef05dd3eabc3 |
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| 4:9cb37bf9e298 | 5:c618332f2386 |
|---|---|
| 10 @GENOME_SELECTOR_PRE@ | 10 @GENOME_SELECTOR_PRE@ |
| 11 | 11 |
| 12 python '$__tool_directory__/phage_annotation_table.py' | 12 python '$__tool_directory__/phage_annotation_table.py' |
| 13 '$gff3_data' | 13 '$gff3_data' |
| 14 @GENOME_SELECTOR@ | 14 @GENOME_SELECTOR@ |
| 15 --types "$extraTypes" | |
| 16 --reportTemplateName "$report_format" | 15 --reportTemplateName "$report_format" |
| 17 --annotationTableCols "$cols,$gaf_cols" | 16 --annotationTableCols "$cols,$gaf_cols" |
| 17 #if $extraTypes: | |
| 18 --types "$extraTypes" | |
| 19 #end if | |
| 18 #if $gaf_data: | 20 #if $gaf_data: |
| 19 --gafData "$gaf_data" | 21 --gafData "$gaf_data" |
| 20 #end if | 22 #end if |
| 21 --searchSubs '$checkSubfeats' | 23 '$checkSubfeats' |
| 22 > '$output']]></command> | 24 > '$output']]></command> |
| 23 <inputs> | 25 <inputs> |
| 24 <expand macro="gff3_input"/> | 26 <expand macro="gff3_input"/> |
| 25 <expand macro="genome_selector"/> | 27 <expand macro="genome_selector"/> |
| 26 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/> | 28 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/> |