Mercurial > repos > cpt > cpt_annotation_table

diff phage_annotation_table.xml @ 5:c618332f2386 draft

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planemo upload commit 8e1cddcc571bcc769e20a50cefd14053be5633d6-dirty
author cpt
date Fri, 24 May 2024 04:42:01 +0000
parents 9cb37bf9e298
children ef05dd3eabc3
line wrap: on
line diff
--- a/phage_annotation_table.xml	Fri May 24 04:16:49 2024 +0000
+++ b/phage_annotation_table.xml	Fri May 24 04:42:01 2024 +0000
@@ -12,13 +12,15 @@
 python '$__tool_directory__/phage_annotation_table.py'
 '$gff3_data'
 @GENOME_SELECTOR@
---types "$extraTypes"
 --reportTemplateName "$report_format"
 --annotationTableCols "$cols,$gaf_cols"
+#if $extraTypes:
+--types "$extraTypes"
+#end if
 #if $gaf_data:
 --gafData "$gaf_data"
 #end if
---searchSubs '$checkSubfeats'
+'$checkSubfeats'
 > '$output']]></command>
     <inputs>
         <expand macro="gff3_input"/>