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annotate cpt-macros.xml @ 3:3e3d85f41503 draft

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author cpt
date Mon, 05 Jun 2023 02:39:51 +0000
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1 <macros>
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2 <xml name="gff_requirements">
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3 <requirements>
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4 <requirement type="package" version="2.7">python</requirement>
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5 <requirement type="package" version="1.65">biopython</requirement>
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6 <requirement type="package" version="2.12.1">requests</requirement>
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7 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
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8 <yield/>
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9 </requirements>
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10 <version_command>
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11 <![CDATA[
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12 cd '$__tool_directory__' && git rev-parse HEAD
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13 ]]>
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14 </version_command>
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15 </xml>
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16 <xml name="citation/mijalisrasche">
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17 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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18 <citation type="bibtex">@unpublished{galaxyTools,
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19 author = {E. Mijalis, H. Rasche},
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20 title = {CPT Galaxy Tools},
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21 year = {2013-2017},
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22 note = {https://github.com/tamu-cpt/galaxy-tools/}
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23 }
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24 </citation>
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25 </xml>
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26 <xml name="citations">
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27 <citations>
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28 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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29 <citation type="bibtex">
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30 @unpublished{galaxyTools,
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31 author = {E. Mijalis, H. Rasche},
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32 title = {CPT Galaxy Tools},
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33 year = {2013-2017},
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34 note = {https://github.com/tamu-cpt/galaxy-tools/}
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35 }
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36 </citation>
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37 <yield/>
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38 </citations>
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39 </xml>
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40 <xml name="citations-crr">
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41 <citations>
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42 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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43 <citation type="bibtex">
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44 @unpublished{galaxyTools,
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45 author = {C. Ross},
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46 title = {CPT Galaxy Tools},
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47 year = {2020-},
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48 note = {https://github.com/tamu-cpt/galaxy-tools/}
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49 }
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50 </citation>
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51 <yield/>
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52 </citations>
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53 </xml>
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54 <xml name="citations-2020">
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55 <citations>
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56 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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57 <citation type="bibtex">
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58 @unpublished{galaxyTools,
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59 author = {E. Mijalis, H. Rasche},
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60 title = {CPT Galaxy Tools},
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61 year = {2013-2017},
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62 note = {https://github.com/tamu-cpt/galaxy-tools/}
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63 }
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64 </citation>
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65 <citation type="bibtex">
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66 @unpublished{galaxyTools,
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67 author = {A. Criscione},
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68 title = {CPT Galaxy Tools},
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69 year = {2019-2021},
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70 note = {https://github.com/tamu-cpt/galaxy-tools/}
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71 }
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72 </citation>
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73 <yield/>
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74 </citations>
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75 </xml>
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76 <xml name="citations-2020-AJC-solo">
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77 <citations>
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78 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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79 <citation type="bibtex">
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80 @unpublished{galaxyTools,
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81 author = {A. Criscione},
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82 title = {CPT Galaxy Tools},
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83 year = {2019-2021},
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84 note = {https://github.com/tamu-cpt/galaxy-tools/}
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85 }
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86 </citation>
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87 <yield/>
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88 </citations>
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89 </xml>
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90 <xml name="citations-clm">
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91 <citations>
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92 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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93 <citation type="bibtex">
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94 @unpublished{galaxyTools,
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95 author = {C. Maughmer},
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96 title = {CPT Galaxy Tools},
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97 year = {2017-2020},
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98 note = {https://github.com/tamu-cpt/galaxy-tools/}
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99 }
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100 </citation>
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101 <yield/>
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102 </citations>
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103 </xml>
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104 <xml name="sl-citations-clm">
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105 <citation type="bibtex">
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106 @unpublished{galaxyTools,
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107 author = {C. Maughmer},
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108 title = {CPT Galaxy Tools},
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109 year = {2017-2020},
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110 note = {https://github.com/tamu-cpt/galaxy-tools/}
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111 }
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112 </citation>
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113 <yield/>
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114 </xml>
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115 </macros>