Mercurial > repos > cpt > cpt_bprom_converter

diff bprom_gff3_converter.xml @ 0:14e64dda68c8 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 852ac96ca53a2ffa0947e6df5e24671866b642f5
author cpt
date Sun, 23 Jul 2023 01:47:35 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bprom_gff3_converter.xml	Sun Jul 23 01:47:35 2023 +0000
@@ -0,0 +1,33 @@
+<tool id="edu.tamu.cpt.external.BPROM-gff3" name="Convert BPROM results to GFF" version="22.1.0.0">
+  <description/>
+  <requirements>
+    <requirement type="package" version="3.8">python</requirement>
+    <requirement type="package" version="1.0.5">pandas</requirement>
+  </requirements>
+  <command detect_errors="aggressive"><![CDATA[
+python3.8 '$__tool_directory__/bprom_gff3_converter.py'
+-f '$txtIn'
+> '$gffOut']]></command>
+  <inputs>
+    <param name="txtIn" type="data" label="BPROM Results" format="txt"/>
+  </inputs>
+  <outputs>
+    <data format="gff3" name="gffOut" label="BPROM to GFF Results"/>
+  </outputs>
+  <tests/>
+  <help><![CDATA[
+**What it does**
+
+Converts BPROM text output to GFF3 format
+      ]]></help>
+  <citations>
+    <citation type="bibtex">
+			@unpublished{galaxyTools,
+				author = {J. Chamblee},
+				title = {CPT Galaxy Tools},
+				year = {2022},
+				note = {https://github.com/tamu-cpt/galaxy-tools/}
+			}
+                        </citation>
+  </citations>
+</tool>