Mercurial > repos > cpt > cpt_convert_glimmer
comparison cpt_convert_glimmer_to_gff3.py @ 9:14306e57683d draft
planemo upload commit 543b712032e171c27da08e1dfe44b173cdfbe0bd
| author | cpt |
|---|---|
| date | Thu, 27 Jul 2023 04:10:30 +0000 |
| parents | 843ea2c82e9a |
| children |
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| 8:e132a07229c4 | 9:14306e57683d |
|---|---|
| 1 #!/usr/bin/env python | 1 #!/usr/bin/env python |
| 2 import sys | 2 import sys |
| 3 import argparse | 3 import argparse |
| 4 from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature | 4 from CPT_GFFParser import gffWrite, gffSeqFeature |
| 5 from Bio import SeqIO | 5 from Bio import SeqIO |
| 6 from Bio.SeqFeature import SeqFeature | |
| 7 from Bio.SeqFeature import FeatureLocation | 6 from Bio.SeqFeature import FeatureLocation |
| 8 import logging | 7 import logging |
| 9 | 8 |
| 10 logging.basicConfig(level=logging.INFO) | 9 logging.basicConfig(level=logging.INFO) |
| 11 | 10 |
