# HG changeset patch
# User cpt
# Date 1690046142 0
# Node ID c62acc3e4bf69fd145ef22d4237c6b365c9fb9a7
# Parent  9c03867832fc083552df66d68fbe2fc1147da1e3
planemo upload commit 852ac96ca53a2ffa0947e6df5e24671866b642f5

diff -r 9c03867832fc -r c62acc3e4bf6 all_fasta.loc.sample
--- a/all_fasta.loc.sample	Sat Jul 22 17:13:37 2023 +0000
+++ b/all_fasta.loc.sample	Sat Jul 22 17:15:42 2023 +0000
@@ -1,8 +1,18 @@
-<!-- not a real sample -->
-<tables>
-    <!-- Locations of all fasta files under genome directory -->
-    <table name="all_fasta" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/all_fasta.loc" />
-    </table>
-</tables>
\ No newline at end of file
+#This file lists the locations and dbkeys of all the fasta files
+#under the "genome" directory (a directory that contains a directory
+#for each build). The script extract_fasta.py will generate the file
+#all_fasta.loc. This file has the format (white space characters are
+#TAB characters):
+#
+#<unique_build_id>	<dbkey>	<display_name>	<file_path>
+#
+#So, all_fasta.loc could look something like this:
+#
+#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3	/path/to/genome/apiMel3/apiMel3.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/path/to/genome/hg19/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/path/to/genome/hg19/hg19full.fa
+#
+#Your all_fasta.loc file should contain an entry for each individual
+#fasta file. So there will be multiple fasta files for each build,
+#such as with hg19 above.
+#
\ No newline at end of file
diff -r 9c03867832fc -r c62acc3e4bf6 tool_data_table_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Sat Jul 22 17:15:42 2023 +0000
@@ -0,0 +1,8 @@
+<!-- not a real sample -->
+<tables>
+    <!-- Locations of all fasta files under genome directory -->
+    <table name="all_fasta" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/all_fasta.loc" />
+    </table>
+</tables>
\ No newline at end of file