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diff cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml @ 0:b4134ad44443 draft

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author cpt
date Fri, 13 May 2022 18:03:32 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml	Fri May 13 18:03:32 2022 +0000
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool id="tRNA-SE_scan_to_gff" name="Convert tRNAscan-SE table to gff format" version="20.0.0">
+	<description></description>
+	<macros>
+		<import>macros.xml</import>
+		<import>cpt-macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
+	<command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/tRNAscan_to_gff_SE_format.py
+< $trnascan
+> $output
+]]></command>
+	<inputs>
+			<param format="tabular" type="data" name="trnascan" label="tRNAscan table" />
+	</inputs>
+	<outputs>
+		<data format="gff3" name="output">
+		</data>
+	</outputs>
+	<tests>
+		<test>
+			<param name="trnascan" value="ConvTrnaSe_In.tabular" />
+			<output name="output" file="ConvTrnaSe_Out.gff3" />
+		</test>
+	</tests>
+	<help><![CDATA[
+What it does
+============
+
+Converts tRNAscan-SE table to gff format
+
+]]></help>
+		<expand macro="citations" />
+</tool>