Mercurial > repos > cpt > cpt_disruptin_finder
diff macros.xml @ 2:f046c58687a2 draft default tip
planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
| author | cpt |
|---|---|
| date | Fri, 05 Jan 2024 05:50:20 +0000 |
| parents | b973bc75693d |
| children |
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--- a/macros.xml Mon Jun 05 02:40:49 2023 +0000 +++ b/macros.xml Fri Jan 05 05:50:20 2024 +0000 @@ -1,16 +1,13 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package">progressivemauve</requirement> - <!--<requirement type="package" version="2.7">python</requirement>--> - <requirement type="package" version="0.6.4">bcbiogff</requirement> + <requirement type="package" version="3.9">python</requirement> + <requirement type="package" version="1.81">biopython</requirement> + <requirement type="package" version="1.2.2">cpt_gffparser</requirement> <yield/> </requirements> </xml> <token name="@WRAPPER_VERSION@">2.4.0</token> - <xml name="citation/progressive_mauve"> - <citation type="doi">10.1371/journal.pone.0011147</citation> - </xml> <xml name="citation/gepard"> <citation type="doi">10.1093/bioinformatics/btm039</citation> </xml> @@ -49,6 +46,105 @@ <expand macro="gff3_input"/> <expand macro="genome_selector"/> </xml> + <xml name="citation/mijalisrasche"> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex">@unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-crr"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Ross}, + title = {CPT Galaxy Tools}, + year = {2020-}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-2020"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {E. Mijalis, H. Rasche}, + title = {CPT Galaxy Tools}, + year = {2013-2017}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {A. Criscione}, + title = {CPT Galaxy Tools}, + year = {2019-2021}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-2020-AJC-solo"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {A. Criscione}, + title = {CPT Galaxy Tools}, + year = {2019-2021}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="citations-clm"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1008214</citation> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Maughmer}, + title = {CPT Galaxy Tools}, + year = {2017-2020}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </citations> + </xml> + <xml name="sl-citations-clm"> + <citation type="bibtex"> + @unpublished{galaxyTools, + author = {C. Maughmer}, + title = {CPT Galaxy Tools}, + year = {2017-2020}, + note = {https://github.com/tamu-cpt/galaxy-tools/} + } + </citation> + <yield/> + </xml> <token name="@INPUT_GFF@"> '$gff3_data' </token>