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view cpt_export_seq_unique/gff3_extract_sequence2.xml @ 0:aaed5a0c774c draft
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author | cpt |
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date | Fri, 01 Jul 2022 13:43:49 +0000 |
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<?xml version="1.0"?> <tool id="edu.tamu.cpt.gff3.export_seq_unique" name="Feature Sequence Export Unique" version="1.2"> <description>specially modified for sending CDSs to blast</description> <macros> <import>macros.xml</import> <import>cpt-macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @GENOME_SELECTOR_PRE@ $__tool_directory__/gff3_extract_sequence.py @GENOME_SELECTOR@ @INPUT_GFF@ --feature_filter unique_cds $nodesc > $default 2> $gff3 ]]></command> <inputs> <expand macro="genome_selector" /> <expand macro="gff3_input" /> <param label="Remove description (use if blasting)" name="nodesc" type="boolean" truevalue="--nodesc" falsevalue=""/> </inputs> <outputs> <data format="fasta" hidden="false" name="default"/> <data format="gff3" hidden="false" name="gff3"/> </outputs> <help><![CDATA[ **What it does** Extract fasta sequences from a parent genome. ]]></help> <expand macro="citations" /> </tool>