Mercurial > repos > cpt > cpt_export_seq_unique
view gff3_extract_sequence2.xml @ 1:ac766d7dd641 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:41:21 +0000 |
parents | |
children | 5e8787e39d30 |
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<tool id="edu.tamu.cpt.gff3.export_seq_unique" name="Feature Sequence Export Unique" version="1.2"> <description>specially modified for sending CDSs to blast</description> <macros> <import>macros.xml</import> <import>cpt-macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @GENOME_SELECTOR_PRE@ '$__tool_directory__/gff3_extract_sequence.py' @GENOME_SELECTOR@ @INPUT_GFF@ --feature_filter unique_cds '$nodesc' > '$default' 2> '$gff3' ]]></command> <inputs> <expand macro="genome_selector"/> <expand macro="gff3_input"/> <param label="Remove description (use if blasting)" name="nodesc" type="boolean" truevalue="--nodesc" falsevalue=""/> </inputs> <outputs> <data format="fasta" hidden="false" name="default"/> <data format="gff3" hidden="false" name="gff3"/> </outputs> <help><![CDATA[ **What it does** Extract fasta sequences from a parent genome. ]]></help> <expand macro="citations"/> </tool>