Mercurial > repos > cpt > cpt_fix_aragorn
comparison fix-aragorn-gff3.py @ 4:733cb0807083 draft
planemo upload commit 2a0a6b62f75ceb10ac3287e69c1849f09a9cf177
author | cpt |
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date | Wed, 30 Aug 2023 01:44:58 +0000 |
parents | f0f0ab9db43f |
children |
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3:f0f0ab9db43f | 4:733cb0807083 |
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1 #!/usr/bin/env python | 1 #!/usr/bin/env python |
2 import sys | 2 import sys |
3 import logging | 3 import logging |
4 import argparse | 4 import argparse |
5 from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature | 5 from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature |
6 from Bio.SeqFeature import SeqFeature | |
7 from gff3 import feature_lambda, feature_test_type | 6 from gff3 import feature_lambda, feature_test_type |
8 | 7 |
9 logging.basicConfig(level=logging.INFO) | 8 logging.basicConfig(level=logging.INFO) |
10 log = logging.getLogger(__name__) | 9 log = logging.getLogger(__name__) |
11 | 10 |