Mercurial > repos > cpt > cpt_fix_aragorn

changeset 4:733cb0807083 draft

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planemo upload commit 2a0a6b62f75ceb10ac3287e69c1849f09a9cf177
author cpt
date Wed, 30 Aug 2023 01:44:58 +0000
parents f0f0ab9db43f
children 8da37080e35f
files fix-aragorn-gff3.py fix-aragorn-gff3.xml
diffstat 2 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/fix-aragorn-gff3.py	Mon Jun 05 02:42:12 2023 +0000
+++ b/fix-aragorn-gff3.py	Wed Aug 30 01:44:58 2023 +0000
@@ -3,7 +3,6 @@
 import logging
 import argparse
 from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature
-from Bio.SeqFeature import SeqFeature
 from gff3 import feature_lambda, feature_test_type
 
 logging.basicConfig(level=logging.INFO)
--- a/fix-aragorn-gff3.xml	Mon Jun 05 02:42:12 2023 +0000
+++ b/fix-aragorn-gff3.xml	Wed Aug 30 01:44:58 2023 +0000
@@ -4,7 +4,11 @@
     <import>macros.xml</import>
     <import>cpt-macros.xml</import>
   </macros>
-  <expand macro="requirements"/>
+  <expand macro="requirements">
+    <requirement type="package" version="3.9.16">python</requirement>
+    <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
+    <requirement type="package" version="1.81">biopython</requirement>
+  </expand>
   <command detect_errors="aggressive"><![CDATA[
 '$__tool_directory__/fix-aragorn-gff3.py'
 @INPUT_GFF@