Mercurial > repos > cpt > cpt_gff_rebase

diff test-data/T7_TMHMM.gff3 @ 1:4f4b413056f6 draft

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:44:12 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/T7_TMHMM.gff3	Mon Jun 05 02:44:12 2023 +0000
@@ -0,0 +1,39 @@
+##gff-version 3
+T7p04	feature	Chain	2	47	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_1-0e35f4c8-7d2d-457e-bf36-a121fcede87d;Note=Transmembrane protein - N out C in;Target=T7p04
+T7p04	TMHMM	Topological domain	1	22	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_1-0e35f4c8-7d2d-457e-bf36-a121fcede87d
+T7p04	TMHMM	Transmembrane	23	45	.	+	.	Note=Helical;Parent=tmhmm_tmd_1-0e35f4c8-7d2d-457e-bf36-a121fcede87d
+T7p04	TMHMM	Topological domain	46	47	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_1-0e35f4c8-7d2d-457e-bf36-a121fcede87d
+##gff-version 3
+T7p11	feature	Chain	2	51	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc;Note=Transmembrane protein - N in C in;Target=T7p11
+T7p11	TMHMM	Topological domain	1	4	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc
+T7p11	TMHMM	Transmembrane	5	24	.	+	.	Note=Helical;Parent=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc
+T7p11	TMHMM	Topological domain	25	27	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc
+T7p11	TMHMM	Transmembrane	28	50	.	+	.	Note=Helical;Parent=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc
+T7p11	TMHMM	Topological domain	51	51	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_2-f3395d64-94df-47d0-b5cd-b098a8fc57fc
+##gff-version 3
+T7p25	feature	Chain	2	112	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9;Note=Transmembrane protein - N in C in;Target=T7p25
+T7p25	TMHMM	Topological domain	1	6	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9
+T7p25	TMHMM	Transmembrane	7	29	.	+	.	Note=Helical;Parent=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9
+T7p25	TMHMM	Topological domain	30	33	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9
+T7p25	TMHMM	Transmembrane	34	56	.	+	.	Note=Helical;Parent=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9
+T7p25	TMHMM	Topological domain	57	112	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_3-bc20f884-acf4-4cc9-a845-838c08833ba9
+##gff-version 3
+T7p36	feature	Chain	2	37	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_4-4bb9c895-cf89-4510-b338-3e8027abfee8;Note=Transmembrane protein - N out C in;Target=T7p36
+T7p36	TMHMM	Topological domain	1	4	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_4-4bb9c895-cf89-4510-b338-3e8027abfee8
+T7p36	TMHMM	Transmembrane	5	24	.	+	.	Note=Helical;Parent=tmhmm_tmd_4-4bb9c895-cf89-4510-b338-3e8027abfee8
+T7p36	TMHMM	Topological domain	25	37	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_4-4bb9c895-cf89-4510-b338-3e8027abfee8
+##gff-version 3
+T7p53	feature	Chain	2	67	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_5-481eeec9-f604-43c0-a99b-3891bd8881bb;Note=Transmembrane protein - N out C in;Target=T7p53
+T7p53	TMHMM	Topological domain	1	36	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_5-481eeec9-f604-43c0-a99b-3891bd8881bb
+T7p53	TMHMM	Transmembrane	37	55	.	+	.	Note=Helical;Parent=tmhmm_tmd_5-481eeec9-f604-43c0-a99b-3891bd8881bb
+T7p53	TMHMM	Topological domain	56	67	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_5-481eeec9-f604-43c0-a99b-3891bd8881bb
+##gff-version 3
+T7p56	feature	Chain	2	83	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_6-32be98b3-e5bc-4ed2-b5ff-d031936e4a6e;Note=Transmembrane protein - N in C out;Target=T7p56
+T7p56	TMHMM	Topological domain	1	27	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_6-32be98b3-e5bc-4ed2-b5ff-d031936e4a6e
+T7p56	TMHMM	Transmembrane	28	50	.	+	.	Note=Helical;Parent=tmhmm_tmd_6-32be98b3-e5bc-4ed2-b5ff-d031936e4a6e
+T7p56	TMHMM	Topological domain	51	83	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_6-32be98b3-e5bc-4ed2-b5ff-d031936e4a6e
+##gff-version 3
+T7p60	feature	Chain	2	49	.	+	.	Description=Transmembrane protein;ID=tmhmm_tmd_7-d18b863e-5930-430b-9a60-666e3a790599;Note=Transmembrane protein - N in C out;Target=T7p60
+T7p60	TMHMM	Topological domain	1	12	.	+	.	Note=Cytoplasmic;Parent=tmhmm_tmd_7-d18b863e-5930-430b-9a60-666e3a790599
+T7p60	TMHMM	Transmembrane	13	30	.	+	.	Note=Helical;Parent=tmhmm_tmd_7-d18b863e-5930-430b-9a60-666e3a790599
+T7p60	TMHMM	Topological domain	31	49	.	+	.	Note=Extracellular;Parent=tmhmm_tmd_7-d18b863e-5930-430b-9a60-666e3a790599